RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 RNF168Q8IYW5 571 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 ZCRB1Q8TBF4 217 aaKnown RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 FAM200AQ8TCP9 573 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 NAIPQ13075 1403 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 MYO1EQ12965 1108 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 TCERG1LQ5VWI1 586 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 NOB1Q9ULX3 412 aaKnown RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 EXOC8Q8IYI6 725 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 TRIM11Q96F44 468 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 FAM204AQ9H8W3 233 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 STIM1Q13586 685 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC26Q8TAB7 109 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 POTEB2H3BUK9 544 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 UBE2HP62256 183 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 MORC4Q8TE76 937 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 CDK13Q14004 1512 aaKnown RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 FAM81AQ8TBF8 368 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 ZMYM3Q14202 1370 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 RALGAPBQ86X10 1494 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 VIMP08670 466 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 LONRF2Q1L5Z9 754 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 TMA7Q9Y2S6 64 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 BRD3Q15059 726 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 FYB1O15117 783 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 BORCS6Q96GS4 357 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 KIF5CO60282 957 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 WDR75Q8IWA0 830 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 KLHL33A6NCF5 533 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 CHMP4BP1P59074 171 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PARD3BQ8TEW8 1205 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 DDX27Q96GQ7 796 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 BAG1Q99933 345 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 ERBINQ96RT1 1412 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 RARSP54136 660 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PARP9Q8IXQ6 854 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 KLC4Q9NSK0 619 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 IFNKQ9P0W0 207 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PHC3Q8NDX5 983 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PRPHP41219 470 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 RGL1Q9NZL6 768 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 TSGA10IPQ3SY00 556 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 KIF1BPQ96EK5 621 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PPP1R13BQ96KQ4 1090 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 DACT1Q9NYF0 836 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 UTP6Q9NYH9 597 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 Q4G0T1 1027 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 KDM4CQ9H3R0 1056 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 MYO1BO43795 1136 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PRPF4BQ13523 1007 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 LARP1BQ659C4 914 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PTPRCP08575 1304 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PDHBP11177 359 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 GPTP24298 496 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC175P0C221 793 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 MATR3P43243 847 aaKnown RBP eCLIP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PLEKHO1Q53GL0 409 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 SUPT3HO75486 399 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 GBP3Q9H0R5 595 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 EXOC5O00471 708 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 SERPINC1P01008 464 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 WHAMMP3Q1A5X7 153 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 PPP1R12CQ9BZL4 782 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 TRAK1Q9UPV9 953 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 A0A087WWV3 80 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 RHBDL2Q9NX52 303 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 NUCB1Q02818 461 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 THEMIS2Q5TEJ8 643 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 NECAB1Q8N987 351 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 CFAP45Q9UL16 551 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 A0A0G2JS52 829 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 TSR1Q2NL82 804 aaKnown RBP3.89□□□□□ -1.79
SYNE1-212ENST00000423061 USP26Q9BXU7 913 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 ABCB6Q9NP58 842 aa3.89□□□□□ -1.79
SYNE1-212ENST00000423061 ARHGAP18Q8N392 663 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 EPB41L2O43491 1005 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 WDHD1O75717 1129 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SYT1P21579 422 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 MAFGO15525 162 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 PPFIA2O75334 1257 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 GPR161Q8N6U8 529 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 ARHGAP22Q7Z5H3 698 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 API5Q9BZZ5 524 aaKnown RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 DDX12PQ92771 950 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 GNAT1P11488 350 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 MYL6BP14649 208 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 USHBP1Q8N6Y0 703 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 HAUS2Q9NVX0 235 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SYNJ2O15056 1496 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 HGSO14964 777 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SPATA21Q7Z572 469 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SAPCD2Q86UD0 394 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SPATA32Q96LK8 384 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 FRMD4BQ9Y2L6 1034 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CTAGE15A4D2H0 777 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CTAGE8P0CG41 777 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 PECAM1P16284 738 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CTAGE6Q86UF2 777 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 CTAGE4Q8IX94 777 aa3.88□□□□□ -1.79
SYNE1-212ENST00000423061 SEC62Q99442 399 aaKnown RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms