RNA–Protein interactions for RNA: ENST00000419007.5

SEMA3B-203, Transcript of semaphorin 3B, humanhuman

TSL 2

Gene SEMA3B, Length 3,283 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-203ENST00000419007 COL15A1P39059 1388 aa17.86■□□□□ 0.45
SEMA3B-203ENST00000419007 TNNT1P13805 278 aa17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 SCRN1Q12765 414 aa17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 SNRKQ9NRH2 765 aa17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 ZNF335Q9H4Z2 1342 aaPredicted RBP17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 ATP5JP18859 108 aa17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 RAPGEF4Q8WZA2 1011 aa17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 U3KPZ7 1027 aaPredicted RBP17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 BECN2A8MW95 431 aa17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 U2AF2P26368 475 aaKnown RBP eCLIP17.85■□□□□ 0.451e-14■□□□□ 8.7
SEMA3B-203ENST00000419007 ERCC4Q92889 916 aaPredicted RBP17.85■□□□□ 0.45
SEMA3B-203ENST00000419007 APOBRQ0VD83 1088 aa17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 MCMDC2Q4G0Z9 681 aa17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 CHST3Q7LGC8 479 aa17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 KLHL34Q8N239 644 aa17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 CACTINQ8WUQ7 758 aaKnown RBP17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 METTL22Q9BUU2 404 aaPredicted RBP17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 A0A087WZG4 1122 aa17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 PTPN12Q05209 780 aaKnown RBP17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 CCAR1Q8IX12 1150 aaKnown RBP17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 TDRD7Q8NHU6 1098 aaKnown RBP17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 ZNF496Q96IT1 587 aaPredicted RBP17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 NCOA5Q9HCD5 579 aaKnown RBP17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 TAOK2Q9UL54 1235 aa17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 USP16Q9Y5T5 823 aa17.84■□□□□ 0.45
SEMA3B-203ENST00000419007 CCDC144BQ3MJ40 725 aa17.83■□□□□ 0.45
SEMA3B-203ENST00000419007 FILIP1Q7Z7B0 1213 aa17.83■□□□□ 0.45
SEMA3B-203ENST00000419007 PLA2G4DQ86XP0 818 aa17.83■□□□□ 0.45
SEMA3B-203ENST00000419007 CCDC144CPQ8IYA2 1237 aa17.83■□□□□ 0.45
SEMA3B-203ENST00000419007 PRDM4Q9UKN5 801 aa17.83■□□□□ 0.45
SEMA3B-203ENST00000419007 NFAT5O94916 1531 aa17.83■□□□□ 0.45
SEMA3B-203ENST00000419007 TSGA10IPQ3SY00 556 aa17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 AEBP2Q6ZN18 517 aaPredicted RBP17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 ALDH8A1Q9H2A2 487 aaPredicted RBP17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 GOLIM4O00461 696 aa17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 ARID5BQ14865 1188 aa17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 USPL1Q5W0Q7 1092 aa17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 CCDC73Q6ZRK6 1079 aa17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 C11orf57Q6ZUT1 292 aaPredicted RBP17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 ZSCAN16Q9H4T2 348 aaPredicted RBP17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 HEG1Q9ULI3 1381 aa17.83■□□□□ 0.44
SEMA3B-203ENST00000419007 ME1P48163 572 aa17.82■□□□□ 0.44
SEMA3B-203ENST00000419007 TTC5Q8N0Z6 440 aa17.82■□□□□ 0.44
SEMA3B-203ENST00000419007 COPRSQ9NQ92 184 aa17.82■□□□□ 0.44
SEMA3B-203ENST00000419007 ZNF609O15014 1411 aa17.82■□□□□ 0.44
SEMA3B-203ENST00000419007 ZNF142P52746 1687 aaPredicted RBP17.82■□□□□ 0.44
SEMA3B-203ENST00000419007 LMTK3Q96Q04 1460 aa17.82■□□□□ 0.44
SEMA3B-203ENST00000419007 STOX1Q6ZVD7 989 aa17.82■□□□□ 0.44
SEMA3B-203ENST00000419007 PTPDC1A2A3K4 754 aa17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 KINO60870 393 aaKnown RBP17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 ATF3P18847 181 aa17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 NAA30Q147X3 362 aaPredicted RBP17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 RBM43Q6ZSC3 357 aaKnown RBP17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 DDX17Q92841 729 aaKnown RBP17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 NCAPD2Q15021 1401 aa17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 LMBR1LQ6UX01 489 aa17.81■□□□□ 0.44
SEMA3B-203ENST00000419007 TMEM94Q12767 1356 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 CCDC112Q8NEF3 446 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 USP28Q96RU2 1077 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 SLC52A2Q9HAB3 445 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 A0A0G2JLW4 131 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 CSB-PGBD3P0DP91 1061 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 TIMM10P62072 90 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 ADGRL3Q9HAR2 1447 aa17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 NSUN7Q8NE18 718 aaKnown RBP17.8■□□□□ 0.44
SEMA3B-203ENST00000419007 DHX32Q7L7V1 743 aaKnown RBP17.79■□□□□ 0.44
SEMA3B-203ENST00000419007 GOLPH3LQ9H4A5 285 aa17.79■□□□□ 0.44
SEMA3B-203ENST00000419007 TRMT1Q9NXH9 659 aaKnown RBP17.79■□□□□ 0.44
SEMA3B-203ENST00000419007 RFX5P48382 616 aaPredicted RBP17.79■□□□□ 0.44
SEMA3B-203ENST00000419007 STX1AQ16623 288 aa17.79■□□□□ 0.44
SEMA3B-203ENST00000419007 HAUS7Q99871 368 aa17.79■□□□□ 0.44
SEMA3B-203ENST00000419007 LMO7Q8WWI1 1683 aa17.79■□□□□ 0.44
SEMA3B-203ENST00000419007 IGSF3O75054 1194 aa17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 FSIP1Q8NA03 581 aa17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 ZSCAN20P17040 1043 aaPredicted RBP17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 KBTBD3Q8NAB2 608 aa17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 C19orf44Q9H6X5 657 aa17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 SMTNL1A8MU46 457 aa17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 NCBP1Q09161 790 aaKnown RBP17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 SDF4Q9BRK5 362 aa17.78■□□□□ 0.44
SEMA3B-203ENST00000419007 CTIFO43310 598 aaKnown RBP17.77■□□□□ 0.44
SEMA3B-203ENST00000419007 PFKFB2O60825 505 aa17.77■□□□□ 0.44
SEMA3B-203ENST00000419007 IQCB1Q15051 598 aa17.77■□□□□ 0.44
SEMA3B-203ENST00000419007 CHD2O14647 1828 aaKnown RBP17.77■□□□□ 0.44
SEMA3B-203ENST00000419007 CTDNEP1O95476 244 aa17.77■□□□□ 0.43
SEMA3B-203ENST00000419007 SKILP12757 684 aa17.77■□□□□ 0.43
SEMA3B-203ENST00000419007 ANKRD7Q92527 254 aa17.77■□□□□ 0.43
SEMA3B-203ENST00000419007 USP27XA6NNY8 438 aa17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 SNRPA1P09661 255 aaKnown RBP17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 TATP17735 454 aaPredicted RBP17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 ZRSR1Q15695 479 aaKnown RBP17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 CEP135Q66GS9 1140 aa17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 LRRC8AQ8IWT6 810 aa17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 PAG1Q9NWQ8 432 aa17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 JCADQ9P266 1359 aa17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 HMGB1P09429 215 aaKnown RBP17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 SF3A1Q15459 793 aaKnown RBP17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 OTUD7BQ6GQQ9 843 aa17.76■□□□□ 0.43
SEMA3B-203ENST00000419007 KRT28Q7Z3Y7 464 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms