RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CDC5LQ99459 802 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 PAIP2Q9BPZ3 127 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 WASLO00401 505 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 NASPP49321 788 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 HSP90AB2PQ58FF8 381 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC117Q8IWD4 279 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 RGS22Q8NE09 1264 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CDK19Q9BWU1 502 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 VEZTQ9HBM0 779 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 KCNG1Q9UIX4 513 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 DDX49Q9Y6V7 483 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 MYBBP1AQ9BQG0 1328 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CPLX1O14810 134 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 TNFAIP1Q13829 316 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 KMT5BQ4FZB7 885 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CETN1Q12798 172 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 SEPT6Q14141 434 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 ENOX2Q16206 610 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 BMP2KQ9NSY1 1161 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC175P0C221 793 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC192P0DO97 292 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 MATR3P43243 847 aaKnown RBP eCLIP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 MAP7Q14244 749 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 SEPT7Q16181 437 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CC2D1BQ5T0F9 858 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 TNS4Q8IZW8 715 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 ZGPATQ8N5A5 531 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 TRIML1Q8N9V2 468 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 TPCN1Q9ULQ1 816 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 A2MP01023 1474 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 NOS1P29475 1434 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 KIF5CO60282 957 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 FBXO31Q5XUX0 539 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 RUFY4Q6ZNE9 571 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 HOMER1Q86YM7 354 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 COG6Q9Y2V7 657 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 DALRD3Q5D0E6 543 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CDC37L1Q7L3B6 337 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 ZNF771Q7L3S4 317 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC82Q8N4S0 544 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 COL17A1Q9UMD9 1497 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 KANK3Q6NY19 840 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 ZNF397Q8NF99 534 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CUL5Q93034 780 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 BTG4Q9NY30 223 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 ZEB2O60315 1214 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 ZNF189O75820 626 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 APBB1IPQ7Z5R6 666 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 DZIP1Q86YF9 867 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 MIPOL1Q8TD10 442 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 NCAPGQ9BPX3 1015 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 CCNL1Q9UK58 526 aaPredicted RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 KCNH4Q9UQ05 1017 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 XRN1Q8IZH2 1706 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 ARHGEF28Q8N1W1 1705 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 NCAPD2Q15021 1401 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 SPATA31A6Q5VVP1 1343 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 KDRP35968 1356 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 NEBLO76041 1014 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 MAP4K4O95819 1239 aaPredicted RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 GNAI3P08754 354 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 G3BP1Q13283 466 aaKnown RBP eCLIP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 LARGE2Q8N3Y3 721 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 SIRT1Q96EB6 747 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 NLRP3Q96P20 1036 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 LRRFIP2Q9Y608 721 aaKnown RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 NR1I2O75469 434 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 ILDR1Q86SU0 546 aaPredicted RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC146Q8IYE0 955 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 CEP131Q9UPN4 1083 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 AFDNP55196 1824 aaKnown RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 MICAL3Q7RTP6 2002 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 EPS15P42566 896 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 TMEM132EQ6IEE7 984 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 DPF3Q92784 378 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 RBM17Q96I25 401 aaKnown RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 MMRN2Q9H8L6 949 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 TTC21AQ8NDW8 1320 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 MYH13Q9UKX3 1938 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 BUB1BO60566 1050 aaPredicted RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 ATL3Q6DD88 541 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 KIF2CQ99661 725 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 PDCL3Q9H2J4 239 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 PAXBP1Q9Y5B6 917 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 CHD4Q14839 1912 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 PPFIA2O75334 1257 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC88AQ3V6T2 1871 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 MYH7P12883 1935 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 ANKRD13DQ6ZTN6 518 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 PHF8Q9UPP1 1060 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 M0QZ92 97 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 SOCS7O14512 581 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 USP5P45974 858 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 PLS1Q14651 629 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC158Q5M9N0 1113 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 ZKSCAN2Q63HK3 967 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 CAPZA3Q96KX2 299 aa3.78□□□□□ -1.8
CSMD3-202ENST00000339701 SCAND2PQ9GZW5 306 aaPredicted RBP3.78□□□□□ -1.8
CSMD3-202ENST00000339701 TNNQ9UQP3 1299 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms