RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 TSC22D3Q99576 134 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 RIPOR2Q9Y4F9 1068 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 PRXQ9BXM0 1461 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 LCA5Q86VQ0 697 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 MPHOSPH9Q99550 1183 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 MTA3Q9BTC8 594 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 LRRCC1Q9C099 1032 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ANKRD30BQ9BXX2 1392 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ETF1P62495 437 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 PSME1Q06323 249 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ERCC6LQ2NKX8 1250 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 CWF19L1Q69YN2 538 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC121Q6ZUS5 278 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 DZIP1Q86YF9 867 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 LEO1Q8WVC0 666 aaPredicted RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 GFM2Q969S9 779 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TRPV5Q9NQA5 729 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 SYNJ1O43426 1573 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TIAM1Q13009 1591 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 PRC1O43663 620 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 NUCB1Q02818 461 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 POSTNQ15063 836 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 LONRF2Q1L5Z9 754 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TMX3Q96JJ7 454 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ZMAT2Q96NC0 199 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 SCLT1Q96NL6 688 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 IWS1Q96ST2 819 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 BHMT2Q9H2M3 363 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 KCNF1Q9H3M0 494 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 PPP6R1Q9UPN7 881 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF521Q96K83 1311 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 GOLGA8KD6RF30 607 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TBC1D12O60347 775 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 PAPOLAP51003 745 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 KRT72Q14CN4 511 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 Q4G0T1 1027 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC178Q5BJE1 867 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 REXO1L1PQ8IX06 675 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 MYOCDQ8IZQ8 938 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 JARID2Q92833 1246 aaPredicted RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 CIDEBQ9UHD4 219 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TPX2Q9ULW0 747 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 CLASP1Q7Z460 1538 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 NAIPQ13075 1403 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 RBM47A0AV96 593 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 AP1G2O75843 785 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TBC1D8O95759 1140 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 VIL1P09327 827 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 MSL3P1P0C860 447 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TXLNAP40222 546 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TBC1D8BQ0IIM8 1120 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 NEXNQ0ZGT2 675 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 IQCF2Q8IXL9 164 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ARFGAP2Q8N6H7 521 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 BORCS6Q96GS4 357 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 KLC4Q9NSK0 619 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF232Q9UNY5 417 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF148Q9UQR1 794 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 THRAP3Q9Y2W1 955 aaKnown RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 RPGRIP1LQ68CZ1 1315 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC69A6NI79 296 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 TMEM232C9JQI7 657 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 TSGA10IPQ3SY00 556 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC152Q4G0S7 254 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CACNA2D4Q7Z3S7 1137 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CEP57Q86XR8 500 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CEP57L1Q8IYX8 460 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 GAPVD1Q14C86 1478 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 RPRD2Q5VT52 1461 aaKnown RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 LRRD1A4D1F6 860 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 RTN2O75298 545 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 EZH1Q92800 747 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 ZKSCAN4Q969J2 545 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 SPAG5Q96R06 1193 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 TRAIPQ9BWF2 469 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 MIS18AQ9NYP9 233 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CUX1P39880 1505 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 VIMP08670 466 aaKnown RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 HARSP12081 509 aaKnown RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 UIMC1Q96RL1 719 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 SLC4A1APQ9BWU0 796 aaKnown RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 TMOD4Q9NZQ9 345 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 PHF8Q9UPP1 1060 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 MAP2K7O14733 419 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CCT6AP40227 531 aaKnown RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 INAQ16352 499 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CRELD2Q6UXH1 353 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 LRRC31Q6UY01 552 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 PARP9Q8IXQ6 854 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CNNM3Q8NE01 707 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 ERMNQ8TAM6 284 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 WHAMMQ8TF30 809 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 THOC1Q96FV9 657 aaKnown RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC85AQ96PX6 553 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CTDP1Q9Y5B0 961 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 FAM200BP0CF97 657 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 CNGA1P29973 690 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 SEPT2Q15019 361 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 TBC1D10BQ4KMP7 808 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 MSL1Q68DK7 614 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms