RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 HIP1O00291 1037 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 ZBTB3Q9H5J0 574 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 BCL2L12Q9HB09 334 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 LRRC37A3O60309 1634 aa10.77□□□□□ -0.68
MSH4-201ENST00000263187 FKBP4Q02790 459 aaKnown RBP eCLIP10.77□□□□□ -0.68
MSH4-201ENST00000263187 FILIP1Q7Z7B0 1213 aa10.77□□□□□ -0.68
MSH4-201ENST00000263187 ZHX1Q9UKY1 873 aaPredicted RBP10.77□□□□□ -0.68
MSH4-201ENST00000263187 ISM2Q6H9L7 571 aa10.77□□□□□ -0.69
MSH4-201ENST00000263187 FMNL2Q96PY5 1086 aa10.77□□□□□ -0.69
MSH4-201ENST00000263187 METTL22Q9BUU2 404 aaPredicted RBP10.77□□□□□ -0.69
MSH4-201ENST00000263187 SCAND2PQ9GZW5 306 aaPredicted RBP10.77□□□□□ -0.69
MSH4-201ENST00000263187 SLC52A2Q9HAB3 445 aa10.77□□□□□ -0.69
MSH4-201ENST00000263187 ANKRD1Q15327 319 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 CCDC144BQ3MJ40 725 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 C11orf57Q6ZUT1 292 aaPredicted RBP10.76□□□□□ -0.69
MSH4-201ENST00000263187 CCDC144CPQ8IYA2 1237 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 KCNB2Q92953 911 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 GTF3C6Q969F1 213 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.76□□□□□ -0.69
MSH4-201ENST00000263187 V9GYY5 206 aaPredicted RBP10.76□□□□□ -0.69
MSH4-201ENST00000263187 NPHP1O15259 732 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 LRRC24Q50LG9 513 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 CHMP4AQ9BY43 222 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 TRMT1Q9NXH9 659 aaKnown RBP10.76□□□□□ -0.69
MSH4-201ENST00000263187 CLIP2Q9UDT6 1046 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 TMEM94Q12767 1356 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 GOLGA6L6A8MZA4 724 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 POLR3DP05423 398 aaPredicted RBP10.76□□□□□ -0.69
MSH4-201ENST00000263187 CHAF1AQ13111 956 aaPredicted RBP10.76□□□□□ -0.69
MSH4-201ENST00000263187 TTLL7Q6ZT98 887 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 CCAR1Q8IX12 1150 aaKnown RBP10.76□□□□□ -0.69
MSH4-201ENST00000263187 HDAC5Q9UQL6 1122 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 ZNF609O15014 1411 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 LTN1O94822 1766 aa10.76□□□□□ -0.69
MSH4-201ENST00000263187 ME1P48163 572 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 ATP2B3Q16720 1220 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 MCMDC2Q4G0Z9 681 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 PROSER2Q86WR7 435 aaPredicted RBP10.75□□□□□ -0.69
MSH4-201ENST00000263187 PUS3Q9BZE2 481 aaKnown RBP10.75□□□□□ -0.69
MSH4-201ENST00000263187 MED23Q9ULK4 1368 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 ANKARQ7Z5J8 1434 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 BIN1O00499 593 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 A1BGP04217 495 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 U2AF2P26368 475 aaKnown RBP eCLIP10.75□□□□□ -0.69
MSH4-201ENST00000263187 GOLPH3LQ9H4A5 285 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 CLSTN2Q9H4D0 955 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 NPHP3Q7Z494 1330 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 PTPDC1A2A3K4 754 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 TATP17735 454 aaPredicted RBP10.75□□□□□ -0.69
MSH4-201ENST00000263187 RESTQ13127 1097 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 STK11IPQ8N1F8 1099 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 CACTINQ8WUQ7 758 aaKnown RBP10.75□□□□□ -0.69
MSH4-201ENST00000263187 USP28Q96RU2 1077 aa10.75□□□□□ -0.69
MSH4-201ENST00000263187 GOLGA6L19H0YKK7 550 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 PHKG2P15735 406 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 ATP5JP18859 108 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 RFX5P48382 616 aaPredicted RBP10.74□□□□□ -0.69
MSH4-201ENST00000263187 ZNF75DP51815 510 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 CABP4P57796 275 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 PTPN21Q16825 1174 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 TPD52L1Q16890 204 aaPredicted RBP10.74□□□□□ -0.69
MSH4-201ENST00000263187 SPTLC3Q9NUV7 552 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 USP27XA6NNY8 438 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 CYP27B1O15528 508 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 HMGN5P82970 282 aaKnown RBP10.74□□□□□ -0.69
MSH4-201ENST00000263187 WASHC4Q2M389 1173 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 PI16Q6UXB8 463 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 PRIMPOLQ96LW4 560 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 CACNA1FO60840 1977 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 ERBB3P21860 1342 aa10.74□□□□□ -0.69
MSH4-201ENST00000263187 KIF1AQ12756 1690 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 A0A1B0GVL5 298 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 BECN2A8MW95 431 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 CTDNEP1O95476 244 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 SNRPA1P09661 255 aaKnown RBP10.73□□□□□ -0.69
MSH4-201ENST00000263187 ZSCAN25Q6NSZ9 544 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 MAP7D2Q96T17 732 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 TNNT1P13805 278 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 PAG1Q9NWQ8 432 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 NHSL1Q5SYE7 1610 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 RXRAP19793 462 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 GORABQ5T7V8 394 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 PDCL2Q8N4E4 241 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 NSUN7Q8NE18 718 aaKnown RBP10.73□□□□□ -0.69
MSH4-201ENST00000263187 COPRSQ9NQ92 184 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 DDX19AQ9NUU7 478 aaKnown RBP10.73□□□□□ -0.69
MSH4-201ENST00000263187 HMG20BQ9P0W2 317 aa10.73□□□□□ -0.69
MSH4-201ENST00000263187 MARF1Q9Y4F3 1742 aaKnown RBP10.72□□□□□ -0.69
MSH4-201ENST00000263187 MST1RQ04912 1400 aa10.72□□□□□ -0.69
MSH4-201ENST00000263187 FSIP1Q8NA03 581 aa10.72□□□□□ -0.69
MSH4-201ENST00000263187 CCDC94Q9BW85 323 aaPredicted RBP10.72□□□□□ -0.69
MSH4-201ENST00000263187 U3KPZ7 1027 aaPredicted RBP10.72□□□□□ -0.69
MSH4-201ENST00000263187 NFAT5O94916 1531 aa10.72□□□□□ -0.69
MSH4-201ENST00000263187 UTYO14607 1347 aa10.72□□□□□ -0.69
MSH4-201ENST00000263187 SDF4Q9BRK5 362 aa10.72□□□□□ -0.69
MSH4-201ENST00000263187 ELP1O95163 1332 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 E7EWF7 191 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 IFIT1P09914 478 aaKnown RBP10.71□□□□□ -0.69
MSH4-201ENST00000263187 KRT32Q14532 448 aa10.71□□□□□ -0.69
MSH4-201ENST00000263187 IFNL2Q8IZJ0 200 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms