RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 EDEM2Q9BV94 578 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 SYT4Q9H2B2 425 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 CDCP1Q9H5V8 836 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 GNG8Q9UK08 70 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF292O60281 2723 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 NPIPB13A6NJU9 1138 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 NPIPB4C9JG80 1138 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 RGS5O15539 181 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 SERPINA3P01011 423 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 ICAM2P13598 275 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 TCN2P20062 427 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 PUDPQ08623 228 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 SPEM2Q0P670 501 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 ATP1A4Q13733 1029 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 INSL4Q14641 139 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 SSPNQ14714 243 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 OR7A5Q15622 319 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF684Q5T5D7 378 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 RPTNQ6XPR3 784 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 RPS19BP1Q86WX3 136 aaKnown RBP23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 CDC20BQ86Y33 519 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 PM20D2Q8IYS1 436 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 NTNG2Q96CW9 530 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 NXPE2Q96DL1 559 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 SMIM19Q96E16 107 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 TTTY10Q9BZA0 68 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 PTGES2Q9H7Z7 377 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 FARSAQ9Y285 508 aaKnown RBP23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 GRIP1Q9Y3R0 1128 aa23.72■■□□□ 1.39
CCDC88C-205ENST00000553403 MS4A18H0YCH9 400 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 SC5DO75845 299 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 CFL1P23528 166 aaKnown RBP23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 BLVRAP53004 296 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 MS4A18Q3C1V0 323 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 PLEKHG7Q6ZR37 379 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 WDSUB1Q8N9V3 476 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 TEX19Q8NA77 164 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 HAVCR2Q8TDQ0 301 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 ANGPTL4Q9BY76 406 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 CHST11Q9NPF2 352 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 FAIMQ9NVQ4 179 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 ALKBH4Q9NXW9 302 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 DAPK2Q9UIK4 370 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 PCDHGA1Q9Y5H4 931 aa23.71■■□□□ 1.39
CCDC88C-205ENST00000553403 CCDC187A0A096LP49 1063 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 SHISA3A0PJX4 238 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 A6NIZ1 184 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 LIPT2A6NK58 231 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 EFNA2O43921 213 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 MT-CO3P00414 261 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 PLGP00747 810 aaPredicted RBP23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 TFPIP10646 304 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 IMPDH2P12268 514 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 ADH6P28332 368 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 RAP1BP61224 184 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 RAP1AP62834 184 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 EIF3IQ13347 325 aaKnown RBP23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 OXA1LQ15070 435 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 PAMR1Q6UXH9 720 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 PXKQ7Z7A4 578 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 SNX29P2Q8IUI4 249 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 RPS4Y2Q8TD47 263 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 GHSRQ92847 366 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 KLHL15Q96M94 604 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 SH2D2AQ9NP31 389 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 TBCCD1Q9NVR7 557 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 FBXL2Q9UKC9 423 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 B9D1Q9UPM9 204 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 TRAPPC4Q9Y296 219 aa23.7■■□□□ 1.39
CCDC88C-205ENST00000553403 CPAMD8Q8IZJ3 1885 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 hCG_2014768A0A024R1R8 64 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 A0A087WZY1 265 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 PMS2P1A4D2B8 440 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 C9orf172C9J069 976 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 MAGEB4O15481 346 aaPredicted RBP23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 HPP00738 406 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 OCM2P0CE71 109 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 OCMP0CE72 109 aaPredicted RBP23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 IL11P20809 199 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 FKBP2P26885 142 aaKnown RBP23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 EIF1P41567 113 aaKnown RBP23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 GDI2P50395 445 aaKnown RBP23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 MRPL28Q13084 256 aaKnown RBP23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 CHAF1BQ13112 559 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 PLCZ1Q86YW0 608 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 PAQR8Q8TEZ7 354 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 ADAD1Q96M93 576 aaKnown RBP23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 CCDC32Q9BV29 185 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 WDR76Q9H967 626 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 FANCFQ9NPI8 374 aa23.7■■□□□ 1.38
CCDC88C-205ENST00000553403 GPR179Q6PRD1 2367 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 SHISA8B8ZZ34 492 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 PHYHO14832 338 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 LRP3O75074 770 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 TACSTD2P09758 323 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 EDNRAP25101 427 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 OTX2P32243 289 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 TRIM16LQ309B1 348 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 DDI2Q5TDH0 399 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 FAM205BPQ63HN1 556 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms