RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 LURAP1Q96LR2 239 aa13.82□□□□□ -0.2
RPAIN-206ENST00000539417 LRGUKQ96M69 825 aa13.82□□□□□ -0.2
RPAIN-206ENST00000539417 ALPK1Q96QP1 1244 aa13.82□□□□□ -0.2
RPAIN-206ENST00000539417 CLEC4MQ9H2X3 399 aaPredicted RBP13.82□□□□□ -0.2
RPAIN-206ENST00000539417 MAGIXQ9H6Y5 334 aa13.82□□□□□ -0.2
RPAIN-206ENST00000539417 INIPQ9NRY2 104 aa13.82□□□□□ -0.2
RPAIN-206ENST00000539417 LYVE1Q9Y5Y7 322 aa13.82□□□□□ -0.2
RPAIN-206ENST00000539417 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.81□□□□□ -0.2
RPAIN-206ENST00000539417 KRT33AO76009 404 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 PLAUP00749 431 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 PPP3CBP16298 524 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 ACKR1Q16570 336 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 CEACAM16Q2WEN9 425 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 ARMC4Q5T2S8 1044 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 OAFQ86UD1 273 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 OR1K1Q8NGR3 316 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 ASB10Q8WXI3 467 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 UTP4Q969X6 686 aaKnown RBP13.81□□□□□ -0.2
RPAIN-206ENST00000539417 SLCO4A1Q96BD0 722 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 C1QTNF6Q9BXI9 259 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 POLDIP3Q9BY77 421 aaKnown RBP13.81□□□□□ -0.2
RPAIN-206ENST00000539417 LRMDAQ9H2I8 198 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 CRLF2Q9HC73 371 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 ZNF226Q9NYT6 803 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 IL20RAQ9UHF4 553 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 SLC25A15Q9Y619 301 aa13.81□□□□□ -0.2
RPAIN-206ENST00000539417 A0A096LPE4 126 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 A0A1W2PPZ6 126 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TCRBV3S1A0A5B6 114 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 AQP12BA6NM10 295 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 MCIDASD6RGH6 385 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ZNF587BE7ETH6 402 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 PTP4A3O75365 173 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ATP5HO75947 161 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 PGA4P0DJD7 388 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 PGA3P0DJD8 388 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TUBA1BP68363 451 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TUBA4AP68366 448 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ARF1P84077 181 aaKnown RBP13.8□□□□□ -0.2
RPAIN-206ENST00000539417 CHRNB3Q05901 458 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 FLOT2Q14254 428 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 FAM98BQ52LJ0 330 aaKnown RBP13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ALG10Q5BKT4 473 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TIMM23BQ5SRD1 257 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 THSD4Q6ZMP0 1018 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TUBA1AQ71U36 451 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ASRGL1Q7L266 308 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 RRM2BQ7LG56 351 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 SPATA24Q86W54 205 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 AQP12AQ8IXF9 295 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 GPR137CQ8N3F9 429 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 CLDN22Q8N7P3 220 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 OR9Q2Q8NGE9 314 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 OR6X1Q8NH79 312 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 HSD17B8Q92506 261 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 HTRA1Q92743 480 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 BCL2L2Q92843 193 aaPredicted RBP13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TMEM54Q969K7 222 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 PLPPR2Q96GM1 343 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ZNF347Q96SE7 839 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 CHID1Q9BWS9 393 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 SLC17A5Q9NRA2 495 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 AURKCQ9UQB9 309 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 NOTCH2Q04721 2471 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ABCA4P78363 2273 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 DHRS12A0PJE2 317 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ZNF503-AS2A6NEH8 195 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 DPRXA6NFQ7 191 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ZNF726A6NNF4 738 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 RPL36A-HNRNPH2H7BZ11 118 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 BCL10O95999 233 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 RAP2AP10114 183 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 HMGA2P52926 109 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 IST1P53990 364 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 CTXN1P60606 82 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 MYBPC1Q00872 1141 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TOP3AQ13472 1001 aaPredicted RBP13.8□□□□□ -0.2
RPAIN-206ENST00000539417 PPA1Q15181 289 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ZBED5Q49AG3 693 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 LRFN4Q6PJG9 635 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 HDAC2Q92769 488 aaKnown RBP13.8□□□□□ -0.2
RPAIN-206ENST00000539417 TSPAN32Q96QS1 320 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 PLEKHF2Q9H8W4 249 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ZNF346Q9UL40 294 aaKnown RBP13.8□□□□□ -0.2
RPAIN-206ENST00000539417 SIGLEC7Q9Y286 467 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 ADAM18Q9Y3Q7 739 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 U3KQV3 271 aa13.8□□□□□ -0.2
RPAIN-206ENST00000539417 IGKV1D-43A0A0B4J1Z2 117 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 A0A1W2PRG6 482 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 HTR3EA5X5Y0 456 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 TNFRSF11BO00300 401 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 AKAP8O43823 692 aaKnown RBP13.79□□□□□ -0.2
RPAIN-206ENST00000539417 TRMUO75648 421 aaKnown RBP13.79□□□□□ -0.2
RPAIN-206ENST00000539417 CSNK1A1P48729 337 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 SLC9A3P48764 834 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 ERVK-25P63136 954 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 TBRG1Q3YBR2 411 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 ZNF770Q6IQ21 691 aaPredicted RBP13.79□□□□□ -0.2
RPAIN-206ENST00000539417 HMBOX1Q6NT76 420 aa13.79□□□□□ -0.2
RPAIN-206ENST00000539417 PGBD2Q6P3X8 592 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms