RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 BARHL1Q9BZE3 327 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 INIPQ9NRY2 104 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 MRPL39Q9NYK5 338 aaKnown RBP18.7■□□□□ 0.58
VPS28-209ENST00000528142 MPDZO75970 2070 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 E9PI62 339 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 EFNA2O43921 213 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 LRP3O75074 770 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 NAA10P41227 235 aaPredicted RBP18.69■□□□□ 0.58
VPS28-209ENST00000528142 OR12D2P58182 307 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 SSPNQ14714 243 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 SLC6A19Q695T7 634 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 IL20RBQ6UXL0 311 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 VASH1Q7L8A9 365 aaPredicted RBP18.69■□□□□ 0.58
VPS28-209ENST00000528142 FADS6Q8N9I5 356 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 WDSUB1Q8N9V3 476 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 POC1BQ8TC44 478 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 NTNG2Q96CW9 530 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 ARL5BQ96KC2 179 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 TSSK2Q96PF2 358 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 DCLRE1CQ96SD1 692 aaKnown RBP18.69■□□□□ 0.58
VPS28-209ENST00000528142 COQ7Q99807 217 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 MED18Q9BUE0 208 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 ALG12Q9BV10 488 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 CDCP1Q9H5V8 836 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 TRIM36Q9NQ86 728 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 FOXJ2Q9P0K8 574 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 MOKQ9UQ07 419 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 FARSAQ9Y285 508 aaKnown RBP18.69■□□□□ 0.58
VPS28-209ENST00000528142 PCDHGB7Q9Y5F8 929 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 ZNF292O60281 2723 aa18.69■□□□□ 0.58
VPS28-209ENST00000528142 CCDC187A0A096LP49 1063 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 C11orf98E9PRG8 122 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 MASP2O00187 686 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 SELENOFO60613 162 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 IL1AP01583 271 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 GAAP10253 952 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 PYCR1P32322 319 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 ZNF41P51814 821 aaPredicted RBP18.68■□□□□ 0.58
VPS28-209ENST00000528142 MAP2K6P52564 334 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 MLF1P58340 268 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 INAQ16352 499 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 TBC1D25Q3MII6 688 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 RPS19BP1Q86WX3 136 aaKnown RBP18.68■□□□□ 0.58
VPS28-209ENST00000528142 OR6K6Q8NGW6 343 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 MFSD8Q8NHS3 518 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 ZNF417Q8TAU3 575 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 KCTD7Q96MP8 289 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 ZNF587Q96SQ5 575 aaPredicted RBP18.68■□□□□ 0.58
VPS28-209ENST00000528142 TMED9Q9BVK6 235 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 C6orf62Q9GZU0 229 aaPredicted RBP18.68■□□□□ 0.58
VPS28-209ENST00000528142 RERGLQ9H628 205 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 FBXL2Q9UKC9 423 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 PCNX2A6NKB5 2137 aa18.68■□□□□ 0.58
VPS28-209ENST00000528142 A0A075B6Q4 140 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 FAM171A2A8MVW0 826 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 SHISA8B8ZZ34 492 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 J3QLW9 94 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 DCTN6O00399 190 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 RNF13O43567 381 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 HLA-DPB1P04440 258 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 ZNF19P17023 458 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 IL11P20809 199 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 GALP22466 123 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 CAPZA2P47755 286 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 EIF3IQ13347 325 aaKnown RBP18.67■□□□□ 0.58
VPS28-209ENST00000528142 LYPD4Q6UWN0 246 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 ZNF519Q8TB69 540 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 ASB15Q8WXK1 588 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 SH3GL3Q99963 347 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 SH2D2AQ9NP31 389 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 SNTG1Q9NSN8 517 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 COPS3Q9UNS2 423 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 B3GNT3Q9Y2A9 372 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 H7C1C5 153 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 CDRT1O95170 752 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 IGHMP01871 453 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 OTX2P32243 289 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 RORCP51449 518 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 SSR4P51571 173 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 RPL27P61353 136 aaKnown RBP18.67■□□□□ 0.58
VPS28-209ENST00000528142 LCN6P62502 163 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 ACKR1Q16570 336 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 STPG1Q5TH74 334 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 C16orf87Q6PH81 154 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 DHRS13Q6UX07 377 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 OR6V1Q8N148 313 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 SYS1Q8N2H4 156 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 RELTQ969Z4 430 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 SLC25A46Q96AG3 418 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 DDIT4LQ96D03 193 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 DTNBP1Q96EV8 351 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 HDHD5Q9BXW7 423 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 POTEKPQ9BYX7 375 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 GSTK1Q9Y2Q3 226 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 WDFY3Q8IZQ1 3526 aa18.67■□□□□ 0.58
VPS28-209ENST00000528142 ZFHX2Q9C0A1 2572 aaPredicted RBP18.66■□□□□ 0.58
VPS28-209ENST00000528142 GABRPO00591 440 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 PLPP2O43688 288 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 CD53P19397 219 aa18.66■□□□□ 0.58
VPS28-209ENST00000528142 AHCYP23526 432 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms