RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 EDAQ92838 391 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 ZNF845Q96IR2 970 aaPredicted RBP12.56□□□□□ -0.4
SF3A1-201ENST00000215793 SERTAD4Q9NUC0 356 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 MYH13Q9UKX3 1938 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 CHD2O14647 1828 aaKnown RBP12.56□□□□□ -0.4
SF3A1-201ENST00000215793 PRAMEF27A3QJZ7 478 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 CRYZL1O95825 349 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 PFN3P60673 137 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 SORDQ00796 357 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 MFGE8Q08431 387 aaPredicted RBP12.56□□□□□ -0.4
SF3A1-201ENST00000215793 ACSM1Q08AH1 577 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 HYAL4Q2M3T9 481 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 YIF1BQ5BJH7 314 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 PRAMEF9Q5VWM5 478 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 WDR5BQ86VZ2 330 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 FUNDC1Q8IVP5 155 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 SLC22A24Q8N4F4 322 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 SLAMF9Q96A28 289 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 MKRN2Q9H000 416 aaKnown RBP12.56□□□□□ -0.4
SF3A1-201ENST00000215793 KDM3BQ7LBC6 1761 aa12.56□□□□□ -0.4
SF3A1-201ENST00000215793 MDFIC2A0A1B0GVS7 189 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 STK17BO94768 372 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 CPT2P23786 658 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 ITGB8P26012 769 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 DPP4P27487 766 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 TRHRP34981 398 aaPredicted RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 VRK3Q8IV63 474 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 LAX1Q8IWV1 398 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 LIN37Q96GY3 246 aaPredicted RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 CNTNAP3Q9BZ76 1288 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 ZNF223Q9UK11 482 aaPredicted RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 MRPS28Q9Y2Q9 187 aaKnown RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 A3GALT2U3KPV4 340 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 EDIL3O43854 480 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 NCR1O76036 304 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 ABOP16442 354 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 CD53P19397 219 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 SHC1P29353 583 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 SSTR2P30874 369 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 SLC35D3Q5M8T2 416 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 SYT6Q5T7P8 510 aaPredicted RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 CD300LGQ6UXG3 332 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 GDF7Q7Z4P5 450 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 SVBPQ8N300 66 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 LRRC18Q8N456 261 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 MZB1Q8WU39 189 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 ZFPM2Q8WW38 1151 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 RBMXL1Q96E39 390 aaKnown RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 OCSTAMPQ9BR26 566 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 OR14J1Q9UGF5 321 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 A8MVM7 634 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 H7C1C5 153 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 GABARAPO95166 117 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 LCN6P62502 163 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 ESPNLQ6ZVH7 1005 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 MAVSQ7Z434 540 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 OR11L1Q8NGX0 322 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 HRH4Q9H3N8 390 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 STEAP1Q9UHE8 339 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 TRAPPC2LQ9UL33 140 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 EMC9Q9Y3B6 208 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 TRDV1A0A1B0GX56 115 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 TNFRSF10CO14798 259 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 TAPBPO15533 448 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 PPP3CBP16298 524 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 PRAMEF20Q5VT98 475 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 NKAIN3Q8N8D7 197 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 OR4N2Q8NGD1 307 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 FAM212BQ9NTI7 297 aaPredicted RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 NPAP1Q9NZP6 1156 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 NOSIPQ9Y314 301 aaKnown RBP12.55□□□□□ -0.4
SF3A1-201ENST00000215793 UGT2A1Q9Y4X1 527 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 HS3ST3A1Q9Y663 406 aa12.55□□□□□ -0.4
SF3A1-201ENST00000215793 BLVRBP30043 206 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 CLDN12P56749 244 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 COX20Q5RI15 118 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 PGAP1Q75T13 922 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 USB1Q9BQ65 265 aaKnown RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 TCEAL7Q9BRU2 100 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 MCOLN1Q9GZU1 580 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 NPFFR2Q9Y5X5 522 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 A0A1B0GTW7 788 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 ZNF705FA8MVS1 300 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 KCNK2O95069 426 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 ZNF705DP0CH99 300 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 ZNF705BP0CI00 300 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 SNCAP37840 140 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 GABRA2P47869 451 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 BIDP55957 195 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 AADACL3Q5VUY0 350 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 B3GLCTQ6Y288 498 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 NKX3-1Q99801 234 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 PIGQQ9BRB3 760 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 RP1L1Q8IWN7 2480 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 TMEM221A6NGB7 291 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 MT-ATP6P00846 226 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 PLA2G7Q13093 441 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 IKZF1Q13422 519 aa12.54□□□□□ -0.4
SF3A1-201ENST00000215793 ALKBH1Q13686 389 aaKnown RBP12.54□□□□□ -0.4
SF3A1-201ENST00000215793 C9orf135Q5VTT2 229 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms