RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ANKRD10Q9NXR5 420 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SLCO3A1Q9UIG8 710 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 GAB2Q9UQC2 676 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MRPS2Q9Y399 296 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CMAHPQ9Y471 501 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SQORQ9Y6N5 450 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CLASP1Q7Z460 1538 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ERVK-7P63135 1459 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MYOFQ9NZM1 2061 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MEX3AA1L020 520 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 MCRIP1C9JLW8 97 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 NEURL1O76050 574 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PDGFBP01127 241 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DRD2P14416 443 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ATP6V0D1P61421 351 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 AESQ08117 197 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DSC1Q08554 894 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SOWAHAQ2M3V2 549 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FAM174BQ3ZCQ3 159 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TMIGD1Q6UXZ0 262 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TMED6Q8WW62 240 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 GPX7Q96SL4 187 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ZCCHC4Q9H5U6 513 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 LPAR2Q9HBW0 351 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SLCO1B3Q9NPD5 702 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CPNE7Q9UBL6 633 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SLC7A7Q9UM01 511 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 COL15A1P39059 1388 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TRBV11-1A0A0K0K1C0 115 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SLC5A10A0PJK1 596 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CGB7P0DN87 165 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 NMBRP28336 390 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PGGT1BP53609 377 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 H3F3AP84243 136 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PRAMEF5Q5TYX0 476 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF841Q6ZN19 808 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CSNK1A1LQ8N752 337 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 BEST4Q8NFU0 473 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR5M8Q8NGP6 311 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 NETO1Q8TDF5 533 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TAS1R2Q8TE23 839 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SH3RF2Q8TEC5 729 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 NR4A3Q92570 626 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SLC6A18Q96N87 628 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TSSK6Q9BXA6 273 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 HDHD5Q9BXW7 423 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PLK3Q9H4B4 646 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ELOVL3Q9HB03 270 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 NXT2Q9NPJ8 142 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 RYDENQ9NUL5 291 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ELF5Q9UKW6 265 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 LHX6Q9UPM6 363 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 EXO1Q9UQ84 846 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 RAP2CQ9Y3L5 183 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SCN3AQ9NY46 2000 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TTC37Q6PGP7 1564 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TRAV21A0A0B4J279 112 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 BBIP1A8MTZ0 92 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CLDN11O75508 207 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 MED6O75586 246 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 F7P08709 466 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 IL7P13232 177 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SELPP16109 830 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 KLRK1P26718 216 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ATP1B3P54709 279 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 HERVK_113P61574 105 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 LSM11P83369 360 aaKnown RBP eCLIP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ZP2Q05996 745 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 LTBQ06643 244 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TBC1D28Q2M2D7 210 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM119Q4V9L6 283 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SBK1Q52WX2 424 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 GCSAMLQ5JQS6 135 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF684Q5T5D7 378 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM88Q6PEY1 159 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PAQR6Q6TCH4 344 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR8G5Q8NG78 346 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR52E2Q8NGJ4 325 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR2A1Q8NGT9 310 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR4F5Q8NH21 305 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 C2CD4CQ8TF44 421 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 NSUN4Q96CB9 384 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR4F4Q96R69 305 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 C12orf10Q9HB07 376 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TLR9Q9NR96 1032 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SLC17A7Q9P2U7 560 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PIGLQ9Y2B2 252 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SHANK2Q9UPX8 1470 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 FBLL1A6NHQ2 334 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 MAFO75444 373 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ICAM1P05362 532 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 FOLR1P15328 257 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CELP19835 753 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 MPGP29372 298 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ADPRHP54922 357 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PROX2Q3B8N5 592 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CLVS2Q5SYC1 327 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SHFQ7M4L6 423 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 MEX3DQ86XN8 651 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF441Q8N8Z8 693 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms