RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	AVT1	P47082	602 aa		4.88	□□□□□ -1.63
SSH4	YKL124W	NUP42	P49686	430 aa	Known RBP	4.88	□□□□□ -1.63
SSH4	YKL124W	INP52	P50942	1183 aa		4.88	□□□□□ -1.63
SSH4	YKL124W	SHE10	P53075	577 aa		4.88	□□□□□ -1.63
SSH4	YKL124W	ESF2	P53743	316 aa	Known RBP	4.88	□□□□□ -1.63
SSH4	YKL124W	YNL146W	P53906	100 aa		4.88	□□□□□ -1.63
SSH4	YKL124W	PLP2	Q12017	286 aa		4.88	□□□□□ -1.63
SSH4	YKL124W	RPL22A	P05749	121 aa	Known RBP	4.87	□□□□□ -1.63
SSH4	YKL124W	MAK16	P10962	306 aa	Predicted RBP	4.87	□□□□□ -1.63
SSH4	YKL124W	BIK1	P11709	440 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	KAR1	P11927	433 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	RGP1	P16664	663 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	BMH1	P29311	267 aa	Known RBP	4.87	□□□□□ -1.63
SSH4	YKL124W	PET10	P36139	283 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	PGM2	P37012	569 aa	Known RBP	4.87	□□□□□ -1.63
SSH4	YKL124W	FUI1	P38196	639 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	YHR202W	P38887	602 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	XDJ1	P39102	459 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	MMF1	P40185	145 aa	Known RBP	4.87	□□□□□ -1.63
SSH4	YKL124W	ULP2	P40537	1034 aa	Predicted RBP	4.87	□□□□□ -1.63
SSH4	YKL124W	IES1	P43579	692 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	VTC2	P43585	828 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	GUP1	P53154	560 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	ARK1	P53974	638 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	SPO71	Q03868	1245 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	DAP1	Q12091	152 aa		4.87	□□□□□ -1.63
SSH4	YKL124W	COX4	P04037	155 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	RDS1	P25611	832 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	UBP13	P38187	747 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	YFL052W	P43551	465 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	YNR014W	P53719	212 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	YLR422W	Q06409	1932 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	RPP1B	P10622	106 aa	Known RBP	4.86	□□□□□ -1.63
SSH4	YKL124W	ADK2	P26364	225 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	HIR1	P32479	840 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	VID24	P38263	362 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	REF2	P42073	533 aa	Predicted RBP	4.86	□□□□□ -1.63
SSH4	YKL124W	TAF1	P46677	1066 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	YJL045W	P47052	634 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	TAM41	P53230	385 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	COG8	Q04632	607 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	SDH5	Q08230	162 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	DNL4	Q08387	944 aa	Predicted RBP	4.86	□□□□□ -1.63
SSH4	YKL124W	CDC53	Q12018	815 aa	Known RBP	4.86	□□□□□ -1.63
SSH4	YKL124W	ISU2	Q12056	156 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	YOR022C	Q12204	715 aa		4.86	□□□□□ -1.63
SSH4	YKL124W	TY4B-P	A0A0B7P3V8	1104 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	PRC1	P00729	532 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	RNA1	P11745	407 aa	Known RBP	4.85	□□□□□ -1.63
SSH4	YKL124W	NAM7	P30771	971 aa	Known RBP	4.85	□□□□□ -1.63
SSH4	YKL124W	CYS3	P31373	394 aa	Known RBP	4.85	□□□□□ -1.63
SSH4	YKL124W	SEC6	P32844	805 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	MUM2	P38236	366 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	MMS4	P38257	691 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	SAF1	P38352	637 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	ERC1	P38767	581 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	HYR1	P40581	163 aa	Known RBP	4.85	□□□□□ -1.63
SSH4	YKL124W	VID30	P53076	958 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	VTC3	Q02725	835 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	SYH1	Q02875	849 aa	Known RBP	4.85	□□□□□ -1.63
SSH4	YKL124W	PNG1	Q02890	363 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	CEF1	Q03654	590 aa	Predicted RBP	4.85	□□□□□ -1.63
SSH4	YKL124W	HRQ1	Q05549	1077 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	YDL057W	Q07379	328 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	YPL277C	Q08989	487 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	TY4A-H	Q6Q5P6	413 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	VPS5	Q92331	675 aa		4.85	□□□□□ -1.63
SSH4	YKL124W	ADE4	P04046	510 aa	Known RBP	4.84	□□□□□ -1.63
SSH4	YKL124W	PHO8	P11491	566 aa		4.84	□□□□□ -1.63
SSH4	YKL124W	RSA4	P25382	515 aa	Known RBP	4.84	□□□□□ -1.63
SSH4	YKL124W	SEC21	P32074	935 aa	Known RBP	4.84	□□□□□ -1.63
SSH4	YKL124W	RFS1	P38234	210 aa	Known RBP	4.84	□□□□□ -1.63
SSH4	YKL124W	YER186C	P40101	306 aa		4.84	□□□□□ -1.63
SSH4	YKL124W	BFA1	P47113	574 aa		4.84	□□□□□ -1.63
SSH4	YKL124W	TOF1	P53840	1238 aa		4.84	□□□□□ -1.63
SSH4	YKL124W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
SSH4	YKL124W	YDR090C	Q03193	310 aa		4.84	□□□□□ -1.63
SSH4	YKL124W	TRS130	Q03660	1102 aa		4.84	□□□□□ -1.63
SSH4	YKL124W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
SSH4	YKL124W	PUS1	Q12211	544 aa	Known RBP	4.84	□□□□□ -1.63
SSH4	YKL124W	TOM70	P07213	617 aa	Known RBP	4.83	□□□□□ -1.64
SSH4	YKL124W	PCT1	P13259	424 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	ATE1	P16639	503 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	MBR1	P23493	339 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	CSE2	P33308	149 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	TRM2	P33753	639 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	VPS24	P36095	224 aa	Known RBP	4.83	□□□□□ -1.64
SSH4	YKL124W	CCL1	P37366	393 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	PPS1	P38148	807 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	NPP2	P39997	493 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	YFL034W	P43564	1073 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
SSH4	YKL124W	ASN1	P49089	572 aa	Known RBP	4.83	□□□□□ -1.64
SSH4	YKL124W	HST1	P53685	503 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	ALG11	P53954	548 aa	Known RBP	4.83	□□□□□ -1.64
SSH4	YKL124W	YML083C	Q04526	418 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	YML082W	Q04533	649 aa	Known RBP	4.83	□□□□□ -1.64
SSH4	YKL124W	PIG1	Q06216	648 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	TCO89	Q08921	799 aa		4.83	□□□□□ -1.64
SSH4	YKL124W	LSP1	Q12230	341 aa	Known RBP	4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms