RNA–Protein interactions for RNA: ENST00000554811.5

XRCC3-208, Transcript of X-ray repair cross complementing 3, human

TSL 2

Gene XRCC3, Length 3,668 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
XRCC3-208	ENST00000554811	SDF4	Q9BRK5	362 aa		14.03	□□□□□ -0.16
XRCC3-208	ENST00000554811	BIN1	O00499	593 aa		14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811	APOBR	Q0VD83	1088 aa		14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811	ANKRD13D	Q6ZTN6	518 aa		14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811	KCNH5	Q8NCM2	988 aa		14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811	ZNF496	Q96IT1	587 aa	Predicted RBP	14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811	ZHX1	Q9UKY1	873 aa	Predicted RBP	14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811		V9GYY5	206 aa	Predicted RBP	14.02	□□□□□ -0.16
XRCC3-208	ENST00000554811	TAT	P17735	454 aa	Predicted RBP	14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	CABP4	P57796	275 aa		14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	TPD52L1	Q16890	204 aa	Predicted RBP	14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	TTC14	Q96N46	770 aa		14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	NRBP1	Q9UHY1	535 aa		14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	TTC41P	Q6P2S7	1318 aa		14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	ZNF500	O60304	480 aa	Predicted RBP	14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	KRT28	Q7Z3Y7	464 aa		14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	SYTL4	Q96C24	671 aa	Predicted RBP	14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	NEK1	Q96PY6	1258 aa		14.02	□□□□□ -0.17
XRCC3-208	ENST00000554811	LETM1	O95202	739 aa	Predicted RBP	14.01	□□□□□ -0.17
XRCC3-208	ENST00000554811	POLR3D	P05423	398 aa	Predicted RBP	14.01	□□□□□ -0.17
XRCC3-208	ENST00000554811	ZNF165	P49910	485 aa		14.01	□□□□□ -0.17
XRCC3-208	ENST00000554811	STRN4	Q9NRL3	753 aa		14.01	□□□□□ -0.17
XRCC3-208	ENST00000554811	ADCY9	O60503	1353 aa		14.01	□□□□□ -0.17
XRCC3-208	ENST00000554811	HS1BP3	Q53T59	392 aa		14.01	□□□□□ -0.17
XRCC3-208	ENST00000554811	CCDC73	Q6ZRK6	1079 aa		14.01	□□□□□ -0.17
XRCC3-208	ENST00000554811	AMOT	Q4VCS5	1084 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	ZBTB9	Q96C00	473 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	KIF3A	Q9Y496	699 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	USP31	Q70CQ4	1352 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	HIP1	O00291	1037 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	NR1I2	O75469	434 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	ATP2B1	P20020	1258 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	ZNF790	Q6PG37	636 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	CCDC144CP	Q8IYA2	1237 aa		14	□□□□□ -0.17
XRCC3-208	ENST00000554811	PLEKHG1	Q9ULL1	1385 aa		13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	CPLX1	O14810	134 aa		13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	ZSWIM6	Q9HCJ5	1215 aa		13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	CHMP4C	Q96CF2	233 aa		13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	KIN	O60870	393 aa	Known RBP	13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	ALDH1L1	O75891	902 aa		13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	HSP90AA4P	Q58FG1	418 aa		13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	DBNL	Q9UJU6	430 aa	Known RBP	13.99	□□□□□ -0.17
XRCC3-208	ENST00000554811	KDR	P35968	1356 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	ITSN1	Q15811	1721 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	IGKV5-2	P06315	115 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	RPS6KB1	P23443	525 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	ANKRD1	Q15327	319 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	PPP4R3B	Q5MIZ7	849 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	CLIP2	Q9UDT6	1046 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	RXRA	P19793	462 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	AOX1	Q06278	1338 aa		13.98	□□□□□ -0.17
XRCC3-208	ENST00000554811	TTLL5	Q6EMB2	1281 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	CCDC82	Q8N4S0	544 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	CBX8	Q9HC52	389 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	AP5Z1	O43299	807 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	SMC2	O95347	1197 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	GCKR	Q14397	625 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	NECTIN1	Q15223	517 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	FAM200A	Q8TCP9	573 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	SSH2	Q76I76	1423 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811		A0A0G2JLW4	131 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	NEURL1B	A8MQ27	555 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	MCM5	P33992	734 aa		13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	LEO1	Q8WVC0	666 aa	Predicted RBP	13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	GPHN	Q9NQX3	736 aa	Predicted RBP	13.97	□□□□□ -0.17
XRCC3-208	ENST00000554811	PIBF1	Q8WXW3	757 aa		13.96	□□□□□ -0.17
XRCC3-208	ENST00000554811	NRK	Q7Z2Y5	1582 aa		13.96	□□□□□ -0.17
XRCC3-208	ENST00000554811	DYNC1I1	O14576	645 aa		13.96	□□□□□ -0.17
XRCC3-208	ENST00000554811	IFIT1	P09914	478 aa	Known RBP	13.96	□□□□□ -0.17
XRCC3-208	ENST00000554811	GPT	P24298	496 aa		13.96	□□□□□ -0.17
XRCC3-208	ENST00000554811	CCAR1	Q8IX12	1150 aa	Known RBP	13.96	□□□□□ -0.17
XRCC3-208	ENST00000554811	A1BG	P04217	495 aa		13.96	□□□□□ -0.18
XRCC3-208	ENST00000554811	TNNI3K	Q59H18	835 aa		13.96	□□□□□ -0.18
XRCC3-208	ENST00000554811	FPGT-TNNI3K	V9GXZ4	949 aa		13.96	□□□□□ -0.18
XRCC3-208	ENST00000554811	RIOK3	O14730	519 aa	Known RBP	13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	ATF3	P18847	181 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	ST3GAL1	Q11201	340 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	STK38	Q15208	465 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	TOM1L2	Q6ZVM7	507 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	FAM177A1	Q8N128	213 aa	Predicted RBP	13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	FSIP1	Q8NA03	581 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	MAP4K1	Q92918	833 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	UVSSA	Q2YD98	709 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	CREBRF	Q8IUR6	639 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	KAZALD1	Q96I82	304 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	GJB4	Q9NTQ9	266 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	PEAK1	Q9H792	1746 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	ARID5B	Q14865	1188 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	PTPN21	Q16825	1174 aa		13.95	□□□□□ -0.18
XRCC3-208	ENST00000554811	TNNT1	P13805	278 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	HMGN5	P82970	282 aa	Known RBP	13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	CYP21A2	P08686	494 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	PDCL2	Q8N4E4	241 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811		A0A1B0GVL5	298 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	PTPDC1	A2A3K4	754 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	TAF5L	O75529	589 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	NAA30	Q147X3	362 aa	Predicted RBP	13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms