RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 UBE2HP62256 183 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 APOBRQ0VD83 1088 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 KIAA2012Q0VF49 1180 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 PI16Q6UXB8 463 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 RNF20Q5VTR2 975 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 PHKG2P15735 406 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.1■□□□□ 0.17
PTPN1-202ENST00000541713 ZSWIM6Q9HCJ5 1215 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 ERBB3P21860 1342 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 NPHP3Q7Z494 1330 aa16.1■□□□□ 0.17
PTPN1-202ENST00000541713 OFD1O75665 1012 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 PRDM11Q9NQV5 511 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 TNNI3KQ59H18 835 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 TAF7LQ5H9L4 462 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 GJB4Q9NTQ9 266 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 ATP6V1DQ9Y5K8 247 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 FPGT-TNNI3KV9GXZ4 949 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 IFNL2Q8IZJ0 200 aa16.09■□□□□ 0.17
PTPN1-202ENST00000541713 AP5Z1O43299 807 aa16.08■□□□□ 0.16
PTPN1-202ENST00000541713 KRT85P78386 507 aa16.08■□□□□ 0.16
PTPN1-202ENST00000541713 PTPN12Q05209 780 aaKnown RBP16.08■□□□□ 0.16
PTPN1-202ENST00000541713 METTL22Q9BUU2 404 aaPredicted RBP16.08■□□□□ 0.16
PTPN1-202ENST00000541713 SNRPA1P09661 255 aaKnown RBP16.08■□□□□ 0.16
PTPN1-202ENST00000541713 ISM2Q6H9L7 571 aa16.08■□□□□ 0.16
PTPN1-202ENST00000541713 MAP4K1Q92918 833 aa16.08■□□□□ 0.16
PTPN1-202ENST00000541713 FMNL2Q96PY5 1086 aa16.08■□□□□ 0.16
PTPN1-202ENST00000541713 RXRAP19793 462 aa16.07■□□□□ 0.16
PTPN1-202ENST00000541713 PSMA5P28066 241 aa16.07■□□□□ 0.16
PTPN1-202ENST00000541713 CHMP4CQ96CF2 233 aa16.07■□□□□ 0.16
PTPN1-202ENST00000541713 FAM89AQ96GI7 184 aa16.07■□□□□ 0.16
PTPN1-202ENST00000541713 NEK1Q96PY6 1258 aa16.07■□□□□ 0.16
PTPN1-202ENST00000541713 TNMDQ9H2S6 317 aa16.07■□□□□ 0.16
PTPN1-202ENST00000541713 TAF5LO75529 589 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 CYP21A2P08686 494 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 TOB2Q14106 344 aaPredicted RBP16.06■□□□□ 0.16
PTPN1-202ENST00000541713 CCDC144CPQ8IYA2 1237 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 AOX1Q06278 1338 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 RPS6KB1P23443 525 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 PDLIM2Q96JY6 352 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 NUP62CLQ9H1M0 184 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 POLR3DP05423 398 aaPredicted RBP16.06■□□□□ 0.16
PTPN1-202ENST00000541713 DNAJC25Q9H1X3 360 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 PRDM10Q9NQV6 1147 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 BABAM1Q9NWV8 329 aa16.06■□□□□ 0.16
PTPN1-202ENST00000541713 APPP05067 770 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 EVA1CP58658 441 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 ZNF592Q92610 1267 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 TRIM5Q9C035 493 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 NRBP1Q9UHY1 535 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 SNAP23O00161 211 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 NR1I2O75469 434 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 HOXB7P09629 217 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 ANO6Q4KMQ2 910 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 HELBQ8NG08 1087 aaPredicted RBP16.05■□□□□ 0.16
PTPN1-202ENST00000541713 GOLGB1Q14789 3259 aaKnown RBP16.05■□□□□ 0.16
PTPN1-202ENST00000541713 NWD1Q149M9 1564 aa16.05■□□□□ 0.16
PTPN1-202ENST00000541713 LRMPQ12912 555 aa16.04■□□□□ 0.16
PTPN1-202ENST00000541713 ZSCAN31Q96LW9 406 aaPredicted RBP16.04■□□□□ 0.16
PTPN1-202ENST00000541713 CHMP4AQ9BY43 222 aa16.04■□□□□ 0.16
PTPN1-202ENST00000541713 NBPF26B4DH59 902 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 PTGS1P23219 599 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 ADORA1P30542 326 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 NBPF14Q5TI25 921 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 NBPF10Q6P3W6 841 aaKnown RBP16.03■□□□□ 0.16
PTPN1-202ENST00000541713 CCDC82Q8N4S0 544 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 NBPF15Q8N660 670 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 SH2B1Q9NRF2 756 aaPredicted RBP16.03■□□□□ 0.16
PTPN1-202ENST00000541713 HDAC5Q9UQL6 1122 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 IFIT1P09914 478 aaKnown RBP16.03■□□□□ 0.16
PTPN1-202ENST00000541713 STOX1Q6ZVD7 989 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 C19orf44Q9H6X5 657 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 PYCARDQ9ULZ3 195 aa16.03■□□□□ 0.16
PTPN1-202ENST00000541713 MTX1Q13505 466 aa16.02■□□□□ 0.16
PTPN1-202ENST00000541713 MAP3K11Q16584 847 aa16.02■□□□□ 0.16
PTPN1-202ENST00000541713 BIN1O00499 593 aa16.02■□□□□ 0.15
PTPN1-202ENST00000541713 CCDC192P0DO97 292 aa16.02■□□□□ 0.15
PTPN1-202ENST00000541713 ME1P48163 572 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 TYRO3Q06418 890 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 NOLC1Q14978 699 aaKnown RBP eCLIP16.01■□□□□ 0.151e-5■□□□□ 10.6
PTPN1-202ENST00000541713 TOMM22Q9NS69 142 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 SCRN1Q12765 414 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 PTPN21Q16825 1174 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 DENND2AQ9ULE3 1009 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 COL15A1P39059 1388 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 RGPD1P0DJD0 1748 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 RGPD2P0DJD1 1756 aa16.01■□□□□ 0.15
PTPN1-202ENST00000541713 MCMDC2Q4G0Z9 681 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 FILIP1Q7Z7B0 1213 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 PAG1Q9NWQ8 432 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 A0A1B0GUL7 405 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 NPHP1O15259 732 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 SASS6Q6UVJ0 657 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 CCDC186Q7Z3E2 898 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 LEO1Q8WVC0 666 aaPredicted RBP16■□□□□ 0.15
PTPN1-202ENST00000541713 REREQ9P2R6 1566 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 KIF13AQ9H1H9 1805 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 HIP1O00291 1037 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 INCENPQ9NQS7 918 aa16■□□□□ 0.15
PTPN1-202ENST00000541713 C16orf45Q96MC5 204 aaPredicted RBP15.99■□□□□ 0.15
PTPN1-202ENST00000541713 IQSEC3Q9UPP2 1182 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms