RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 NLRP8Q86W28 1048 aa6.9□□□□□ -1.3
HMGB4-202ENST00000458277 ZNF417Q8TAU3 575 aa6.9□□□□□ -1.3
HMGB4-202ENST00000458277 ZNF587Q96SQ5 575 aaPredicted RBP6.9□□□□□ -1.3
HMGB4-202ENST00000458277 UPF2Q9HAU5 1272 aaKnown RBP6.9□□□□□ -1.3
HMGB4-202ENST00000458277 POGKQ9P215 609 aa6.9□□□□□ -1.3
HMGB4-202ENST00000458277 SATB1Q01826 763 aa6.89□□□□□ -1.31
HMGB4-202ENST00000458277 CASC1Q6TDU7 716 aa6.89□□□□□ -1.31
HMGB4-202ENST00000458277 TP53INP1Q96A56 240 aa6.89□□□□□ -1.31
HMGB4-202ENST00000458277 AIDAQ96BJ3 306 aa6.89□□□□□ -1.31
HMGB4-202ENST00000458277 CGNQ9P2M7 1197 aaKnown RBP6.89□□□□□ -1.31
HMGB4-202ENST00000458277 VPS8Q8N3P4 1428 aa6.89□□□□□ -1.31
HMGB4-202ENST00000458277 GOLGA3Q08378 1498 aa6.89□□□□□ -1.31
HMGB4-202ENST00000458277 URB2Q14146 1524 aaKnown RBP6.89□□□□□ -1.31
HMGB4-202ENST00000458277 ABCC8Q09428 1581 aa6.89□□□□□ -1.31
HMGB4-202ENST00000458277 CUX1P39880 1505 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 GOLGA6L6A8MZA4 724 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 C9orf172C9J069 976 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 GOLGA6L22H0YM25 854 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 PDE3BQ13370 1112 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 COL9A3Q14050 684 aaPredicted RBP6.88□□□□□ -1.31
HMGB4-202ENST00000458277 C8orf86Q6ZUL3 223 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 RPAINQ86UA6 219 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 FMNL2Q96PY5 1086 aa6.88□□□□□ -1.31
HMGB4-202ENST00000458277 R3HCC1Q9Y3T6 440 aaKnown RBP6.88□□□□□ -1.31
HMGB4-202ENST00000458277 TULP2O00295 520 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 MYCP01106 439 aaPredicted RBP6.87□□□□□ -1.31
HMGB4-202ENST00000458277 ATP4AP20648 1035 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 MCM4P33991 863 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 GTF2F1P35269 517 aaKnown RBP eCLIP6.87□□□□□ -1.31
HMGB4-202ENST00000458277 KCNJ4P48050 445 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 FZD5Q13467 585 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 ADGRE1Q14246 886 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 MBTPS1Q14703 1052 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 SKIV2LQ15477 1246 aaKnown RBP6.87□□□□□ -1.31
HMGB4-202ENST00000458277 NBPF9Q3BBW0 867 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 ARSJQ5FYB0 599 aaPredicted RBP6.87□□□□□ -1.31
HMGB4-202ENST00000458277 EGFL6Q8IUX8 553 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 BANK1Q8NDB2 785 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 MYRIPQ8NFW9 859 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 ZNF592Q92610 1267 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 KRTAP4-9Q9BYQ8 210 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 OGFRQ9NZT2 677 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 NOL7Q9UMY1 257 aaKnown RBP6.87□□□□□ -1.31
HMGB4-202ENST00000458277 KNSTRNQ9Y448 316 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 CEP83Q9Y592 693 aa6.87□□□□□ -1.31
HMGB4-202ENST00000458277 SYNJ1O43426 1573 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 CLIP1P30622 1438 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 KTN1Q86UP2 1357 aaKnown RBP6.86□□□□□ -1.31
HMGB4-202ENST00000458277 A0A1W2PNR3 127 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 MAFGO15525 162 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 STAU1O95793 577 aaKnown RBP6.86□□□□□ -1.31
HMGB4-202ENST00000458277 TLR1Q15399 786 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 ESCO1Q5FWF5 840 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 CENPQQ7L2Z9 268 aaPredicted RBP6.86□□□□□ -1.31
HMGB4-202ENST00000458277 SYT9Q86SS6 491 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 TXNRD3Q86VQ6 643 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 SLC26A8Q96RN1 970 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 NCAPGQ9BPX3 1015 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.86□□□□□ -1.31
HMGB4-202ENST00000458277 TRIM34Q9BYJ4 488 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 SMC4Q9NTJ3 1288 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 KCNG1Q9UIX4 513 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 TOP2BQ02880 1626 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 DNMBPQ6XZF7 1577 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 TOPBP1Q92547 1522 aa6.86□□□□□ -1.31
HMGB4-202ENST00000458277 FHAD1B1AJZ9 1412 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 ZMYM3Q14202 1370 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 RAD50Q92878 1312 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 CCDC172P0C7W6 258 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 TRDNQ13061 729 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 GPATCH11Q8N954 259 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 PRDM10Q9NQV6 1147 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 STRN4Q9NRL3 753 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 PCMTD2Q9NV79 361 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 TERF2IPQ9NYB0 399 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 CHMP5Q9NZZ3 219 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 CCDC39Q9UFE4 941 aa6.85□□□□□ -1.31
HMGB4-202ENST00000458277 RRBP1Q9P2E9 1410 aaKnown RBP6.84□□□□□ -1.31
HMGB4-202ENST00000458277 BIVM-ERCC5R4GMW8 1640 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 SELPP16109 830 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 GTF2A1P52655 376 aaPredicted RBP6.84□□□□□ -1.31
HMGB4-202ENST00000458277 CHAF1AQ13111 956 aaPredicted RBP6.84□□□□□ -1.31
HMGB4-202ENST00000458277 SYCP1Q15431 976 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 ZKSCAN8Q15776 578 aaPredicted RBP6.84□□□□□ -1.31
HMGB4-202ENST00000458277 TRAPPC3LQ5T215 181 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 C1orf216Q8TAB5 229 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 GBP4Q96PP9 640 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 CDCA7Q9BWT1 371 aaPredicted RBP6.84□□□□□ -1.31
HMGB4-202ENST00000458277 DIAPH3Q9NSV4 1193 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 MARK1Q9P0L2 795 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 RNF112Q9ULX5 631 aa6.84□□□□□ -1.31
HMGB4-202ENST00000458277 CFAP65Q6ZU64 1925 aaKnown RBP6.84□□□□□ -1.32
HMGB4-202ENST00000458277 NRDCO43847 1150 aa6.83□□□□□ -1.32
HMGB4-202ENST00000458277 ALBP02768 609 aa6.83□□□□□ -1.32
HMGB4-202ENST00000458277 NEFHP12036 1026 aa6.83□□□□□ -1.32
HMGB4-202ENST00000458277 BRPF1P55201 1214 aaPredicted RBP6.83□□□□□ -1.32
HMGB4-202ENST00000458277 RRP1P56182 461 aaKnown RBP6.83□□□□□ -1.32
HMGB4-202ENST00000458277 ANAPC15P60006 121 aa6.83□□□□□ -1.32
HMGB4-202ENST00000458277 MAP2K1Q02750 393 aaPredicted RBP6.83□□□□□ -1.32
HMGB4-202ENST00000458277 NOM1Q5C9Z4 860 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms