RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 AEBP2Q6ZN18 517 aaPredicted RBP24.49■■□□□ 1.51
HMGB4-202ENST00000458277 CHIC1Q5VXU3 224 aa22.86■■□□□ 1.25
HMGB4-202ENST00000458277 SENP3Q9H4L4 574 aaPredicted RBP20.95■□□□□ 0.94
HMGB4-202ENST00000458277 PHF23Q9BUL5 403 aaPredicted RBP20.62■□□□□ 0.89
HMGB4-202ENST00000458277 FOXD1Q16676 465 aa19.63■□□□□ 0.73
HMGB4-202ENST00000458277 POTEDQ86YR6 584 aa19.15■□□□□ 0.66
HMGB4-202ENST00000458277 MSH5O43196 834 aa18.56■□□□□ 0.56
HMGB4-202ENST00000458277 PIAS4Q8N2W9 510 aaPredicted RBP18.23■□□□□ 0.51
HMGB4-202ENST00000458277 PPP6R1Q9UPN7 881 aa17.92■□□□□ 0.46
HMGB4-202ENST00000458277 ADRA2BP18089 450 aa17.85■□□□□ 0.45
HMGB4-202ENST00000458277 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
HMGB4-202ENST00000458277 MAPK8IP2Q13387 824 aaPredicted RBP16.59■□□□□ 0.25
HMGB4-202ENST00000458277 DMRT2Q9Y5R5 561 aa16.51■□□□□ 0.23
HMGB4-202ENST00000458277 CACNB1Q02641 598 aaPredicted RBP16.36■□□□□ 0.21
HMGB4-202ENST00000458277 SCAF1Q9H7N4 1312 aaKnown RBP16.28■□□□□ 0.2
HMGB4-202ENST00000458277 DCAF8L1A6NGE4 600 aa16■□□□□ 0.15
HMGB4-202ENST00000458277 RNF39Q9H2S5 420 aa15.79■□□□□ 0.12
HMGB4-202ENST00000458277 HOXD11P31277 338 aaPredicted RBP15.65■□□□□ 0.1
HMGB4-202ENST00000458277 PPP4R3CPQ6ZMV5 832 aa15.58■□□□□ 0.08
HMGB4-202ENST00000458277 C1QBPQ07021 282 aaKnown RBP15.5■□□□□ 0.07
HMGB4-202ENST00000458277 CNKSR2Q8WXI2 1034 aa15.4■□□□□ 0.06
HMGB4-202ENST00000458277 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
HMGB4-202ENST00000458277 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
HMGB4-202ENST00000458277 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.01□□□□□ -0.01
HMGB4-202ENST00000458277 POTEHQ6S545 545 aa14.9□□□□□ -0.02
HMGB4-202ENST00000458277 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
HMGB4-202ENST00000458277 CAPN15O75808 1086 aa14.61□□□□□ -0.07
HMGB4-202ENST00000458277 DSG3P32926 999 aa14.6□□□□□ -0.07
HMGB4-202ENST00000458277 NPM3O75607 178 aaKnown RBP14.59□□□□□ -0.07
HMGB4-202ENST00000458277 SPINK5Q9NQ38 1064 aaPredicted RBP14.59□□□□□ -0.07
HMGB4-202ENST00000458277 U3KPZ7 1027 aaPredicted RBP14.59□□□□□ -0.07
HMGB4-202ENST00000458277 TRHP20396 242 aaPredicted RBP14.26□□□□□ -0.13
HMGB4-202ENST00000458277 ABCB7O75027 752 aa14.25□□□□□ -0.13
HMGB4-202ENST00000458277 ZNF219Q9P2Y4 722 aaPredicted RBP14.12□□□□□ -0.15
HMGB4-202ENST00000458277 SLC4A2P04920 1241 aa14.08□□□□□ -0.16
HMGB4-202ENST00000458277 APLP2Q06481 763 aa14.08□□□□□ -0.16
HMGB4-202ENST00000458277 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.93□□□□□ -0.18
HMGB4-202ENST00000458277 HNRNPUL2Q1KMD3 747 aaKnown RBP13.93□□□□□ -0.18
HMGB4-202ENST00000458277 RBM42Q9BTD8 480 aaKnown RBP13.93□□□□□ -0.18
HMGB4-202ENST00000458277 CHRDL2Q6WN34 429 aa13.89□□□□□ -0.19
HMGB4-202ENST00000458277 SAMD1Q6SPF0 538 aaPredicted RBP13.84□□□□□ -0.19
HMGB4-202ENST00000458277 KCNA4P22459 653 aa13.82□□□□□ -0.2
HMGB4-202ENST00000458277 POLA2Q14181 598 aa13.7□□□□□ -0.22
HMGB4-202ENST00000458277 SP7Q8TDD2 431 aaPredicted RBP13.68□□□□□ -0.22
HMGB4-202ENST00000458277 MYCNP04198 464 aaPredicted RBP13.49□□□□□ -0.25
HMGB4-202ENST00000458277 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
HMGB4-202ENST00000458277 PIP4P2Q8N4L2 257 aa13.44□□□□□ -0.26
HMGB4-202ENST00000458277 HAX1O00165 279 aa13.4□□□□□ -0.26
HMGB4-202ENST00000458277 REM2Q8IYK8 340 aaPredicted RBP13.39□□□□□ -0.27
HMGB4-202ENST00000458277 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
HMGB4-202ENST00000458277 OSCARQ8IYS5 282 aa13.29□□□□□ -0.28
HMGB4-202ENST00000458277 ATF5Q9Y2D1 282 aaPredicted RBP13.28□□□□□ -0.28
HMGB4-202ENST00000458277 PITPNM1O00562 1244 aa13.27□□□□□ -0.29
HMGB4-202ENST00000458277 FXR2P51116 673 aaKnown RBP eCLIP13.22□□□□□ -0.29
HMGB4-202ENST00000458277 EVX2Q03828 476 aa13.17□□□□□ -0.3
HMGB4-202ENST00000458277 FOXD4L1Q9NU39 408 aa13.04□□□□□ -0.32
HMGB4-202ENST00000458277 PRKAR2AP13861 404 aaKnown RBP12.93□□□□□ -0.34
HMGB4-202ENST00000458277 SLC4A1APQ9BWU0 796 aaKnown RBP12.93□□□□□ -0.34
HMGB4-202ENST00000458277 CLEC11AQ9Y240 323 aa12.89□□□□□ -0.35
HMGB4-202ENST00000458277 SPDYE2BA6NHP3 402 aa12.86□□□□□ -0.35
HMGB4-202ENST00000458277 SPDYE6P0CI01 402 aa12.86□□□□□ -0.35
HMGB4-202ENST00000458277 SPDYE2Q495Y8 402 aa12.86□□□□□ -0.35
HMGB4-202ENST00000458277 LHX8Q68G74 356 aa12.84□□□□□ -0.35
HMGB4-202ENST00000458277 C19orf67A6NJJ6 358 aa12.83□□□□□ -0.36
HMGB4-202ENST00000458277 GABBR2O75899 941 aa12.82□□□□□ -0.36
HMGB4-202ENST00000458277 SPDYE1Q8NFV5 336 aaPredicted RBP12.8□□□□□ -0.36
HMGB4-202ENST00000458277 FBLN2P98095 1184 aa12.78□□□□□ -0.36
HMGB4-202ENST00000458277 CHADLQ6NUI6 762 aa12.7□□□□□ -0.38
HMGB4-202ENST00000458277 ZBTB22O15209 634 aa12.68□□□□□ -0.38
HMGB4-202ENST00000458277 ZNF692Q9BU19 519 aaPredicted RBP12.67□□□□□ -0.38
HMGB4-202ENST00000458277 ATXN8OSP0DMR3 200 aa12.65□□□□□ -0.38
HMGB4-202ENST00000458277 SSUH2Q9Y2M2 353 aa12.61□□□□□ -0.39
HMGB4-202ENST00000458277 MKRN4PQ13434 485 aaPredicted RBP12.6□□□□□ -0.39
HMGB4-202ENST00000458277 PLSCR2Q9NRY7 297 aa12.6□□□□□ -0.39
HMGB4-202ENST00000458277 PRR29P0C7W0 189 aa12.55□□□□□ -0.4
HMGB4-202ENST00000458277 POTEIP0CG38 1075 aa12.54□□□□□ -0.4
HMGB4-202ENST00000458277 CD44P16070 742 aaKnown RBP12.49□□□□□ -0.41
HMGB4-202ENST00000458277 PABPN1Q86U42 306 aaKnown RBP eCLIP12.46□□□□□ -0.41
HMGB4-202ENST00000458277 FARP1Q9Y4F1 1045 aaPredicted RBP12.39□□□□□ -0.43
HMGB4-202ENST00000458277 DCBLD2Q96PD2 775 aa12.38□□□□□ -0.43
HMGB4-202ENST00000458277 CLCN6P51797 869 aa12.32□□□□□ -0.44
HMGB4-202ENST00000458277 ZRANB1Q9UGI0 708 aa12.23□□□□□ -0.45
HMGB4-202ENST00000458277 ZNF579Q8NAF0 562 aaKnown RBP12.21□□□□□ -0.45
HMGB4-202ENST00000458277 OTUD5Q96G74 571 aa12.19□□□□□ -0.46
HMGB4-202ENST00000458277 GALR2O43603 387 aaPredicted RBP12.16□□□□□ -0.46
HMGB4-202ENST00000458277 POTEMA6NI47 508 aa12.14□□□□□ -0.47
HMGB4-202ENST00000458277 POTEB2H3BUK9 544 aa12.13□□□□□ -0.47
HMGB4-202ENST00000458277 POTEGQ6S5H5 508 aa12.08□□□□□ -0.48
HMGB4-202ENST00000458277 CREBZFQ9NS37 354 aa12.07□□□□□ -0.48
HMGB4-202ENST00000458277 PHF12Q96QT6 1004 aa12.02□□□□□ -0.49
HMGB4-202ENST00000458277 PAK3O75914 559 aaPredicted RBP11.99□□□□□ -0.49
HMGB4-202ENST00000458277 PELP1Q8IZL8 1130 aaKnown RBP11.98□□□□□ -0.49
HMGB4-202ENST00000458277 STAG3Q9UJ98 1225 aa11.94□□□□□ -0.5
HMGB4-202ENST00000458277 METRNQ9UJH8 293 aa11.89□□□□□ -0.51
HMGB4-202ENST00000458277 PCDH10Q9P2E7 1040 aa11.88□□□□□ -0.51
HMGB4-202ENST00000458277 POTEJP0CG39 1038 aa11.85□□□□□ -0.51
HMGB4-202ENST00000458277 NPM1P06748 294 aaKnown RBP eCLIP11.84□□□□□ -0.51
HMGB4-202ENST00000458277 ASTLQ6HA08 431 aaPredicted RBP11.82□□□□□ -0.52
HMGB4-202ENST00000458277 SLC39A7Q92504 469 aa11.82□□□□□ -0.52
HMGB4-202ENST00000458277 MS4A3Q96HJ5 214 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms