RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 GPRASP2Q96D09 838 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 SLC4A5Q9BY07 1137 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 MADDQ8WXG6 1647 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 PTPRMP28827 1452 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 WASHC2CQ9Y4E1 1318 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 BACH1O14867 736 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 GABBR2O75899 941 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 EIF4BP23588 611 aaKnown RBP8.42□□□□□ -1.06
MCF2-206ENST00000446225 SERINC3Q13530 473 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 SPC25Q9HBM1 224 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 NEUROD4Q9HD90 331 aa8.42□□□□□ -1.06
MCF2-206ENST00000446225 USP5P45974 858 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 MMP16P51512 607 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 PLEKHG6Q3KR16 790 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 BPHLQ86WA6 291 aaPredicted RBP8.41□□□□□ -1.06
MCF2-206ENST00000446225 RPUSD2Q8IZ73 545 aaKnown RBP8.41□□□□□ -1.06
MCF2-206ENST00000446225 CSRNP1Q96S65 589 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 IRF2BPLQ9H1B7 796 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 ERBINQ96RT1 1412 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 ANKRD50Q9ULJ7 1429 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 ZMYM3Q14202 1370 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 PPP1R12BO60237 982 aaPredicted RBP8.41□□□□□ -1.06
MCF2-206ENST00000446225 SCTRP47872 440 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 EPHA4P54764 986 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 PRDM16Q9HAZ2 1276 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 PRDM9Q9NQV7 894 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 PCDH10Q9P2E7 1040 aa8.41□□□□□ -1.06
MCF2-206ENST00000446225 RIMS1Q86UR5 1692 aaKnown RBP8.4□□□□□ -1.06
MCF2-206ENST00000446225 CCDC194A0A1B0GVG4 234 aa8.4□□□□□ -1.06
MCF2-206ENST00000446225 RAB15P59190 212 aa8.4□□□□□ -1.06
MCF2-206ENST00000446225 DNM1Q05193 864 aaKnown RBP8.4□□□□□ -1.06
MCF2-206ENST00000446225 ORC1Q13415 861 aa8.4□□□□□ -1.06
MCF2-206ENST00000446225 FAM160A2Q8N612 972 aaPredicted RBP8.4□□□□□ -1.06
MCF2-206ENST00000446225 LRCH3Q96II8 777 aa8.4□□□□□ -1.06
MCF2-206ENST00000446225 RNPC3Q96LT9 517 aaKnown RBP8.4□□□□□ -1.06
MCF2-206ENST00000446225 SRPK1Q96SB4 655 aaKnown RBP8.4□□□□□ -1.06
MCF2-206ENST00000446225 NBPF3Q9H094 633 aa8.4□□□□□ -1.06
MCF2-206ENST00000446225 LRFN2Q9ULH4 789 aa8.4□□□□□ -1.06
MCF2-206ENST00000446225 PCDHB3Q9Y5E6 796 aa8.4□□□□□ -1.06
MCF2-206ENST00000446225 SCNN1DP51172 638 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 GDF10P55107 478 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 MAGEC2Q9UBF1 373 aaPredicted RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 NAIPQ13075 1403 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 CNTLNQ9NXG0 1405 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 EIF1AYO14602 144 aaKnown RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 STAU1O95793 577 aaKnown RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 SSBP05455 408 aaKnown RBP eCLIP8.39□□□□□ -1.07
MCF2-206ENST00000446225 FAM26DQ5JW98 314 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 PTCRAQ6ISU1 281 aaPredicted RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 NKX2-3Q8TAU0 364 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 MKL1Q969V6 931 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 C2orf49Q9BVC5 232 aaPredicted RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 QTRT2Q9H974 415 aaKnown RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 ZNF408Q9H9D4 720 aa8.39□□□□□ -1.07
MCF2-206ENST00000446225 G3BP2Q9UN86 482 aaKnown RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 V9GY48 417 aaPredicted RBP8.39□□□□□ -1.07
MCF2-206ENST00000446225 S100BP04271 92 aaPredicted RBP8.38□□□□□ -1.07
MCF2-206ENST00000446225 CCDC24Q8N4L8 307 aa8.38□□□□□ -1.07
MCF2-206ENST00000446225 MORC4Q8TE76 937 aa8.38□□□□□ -1.07
MCF2-206ENST00000446225 DDX56Q9NY93 547 aaKnown RBP8.38□□□□□ -1.07
MCF2-206ENST00000446225 SERTAD1Q9UHV2 236 aa8.38□□□□□ -1.07
MCF2-206ENST00000446225 FER1L4A9Z1Z3 1794 aa8.38□□□□□ -1.07
MCF2-206ENST00000446225 USP31Q70CQ4 1352 aa8.38□□□□□ -1.07
MCF2-206ENST00000446225 PPP1R12AO14974 1030 aaPredicted RBP8.37□□□□□ -1.07
MCF2-206ENST00000446225 U2SURPO15042 1029 aaKnown RBP8.37□□□□□ -1.07
MCF2-206ENST00000446225 C4orf48Q5BLP8 95 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 MEI1Q5TIA1 1274 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 TICAM2Q86XR7 235 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 FOXJ1Q92949 421 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 SPSB2Q99619 263 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.37□□□□□ -1.07
MCF2-206ENST00000446225 VPS9D1Q9Y2B5 631 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 PRKAB1Q9Y478 270 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 MROH1Q8NDA8 1641 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 EIF2AK4Q9P2K8 1649 aaKnown RBP8.37□□□□□ -1.07
MCF2-206ENST00000446225 WASLO00401 505 aaPredicted RBP8.37□□□□□ -1.07
MCF2-206ENST00000446225 OPLAHO14841 1288 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 APLP1P51693 650 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 PLEKHG4Q58EX7 1191 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 TBCELQ5QJ74 424 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 STAG1Q8WVM7 1258 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 EDEM1Q92611 657 aa8.37□□□□□ -1.07
MCF2-206ENST00000446225 KANK1Q14678 1352 aa8.36□□□□□ -1.07
MCF2-206ENST00000446225 HFM1A2PYH4 1435 aa8.36□□□□□ -1.07
MCF2-206ENST00000446225 RNF17Q9BXT8 1623 aaKnown RBP8.36□□□□□ -1.07
MCF2-206ENST00000446225 CLTCQ00610 1675 aaKnown RBP8.36□□□□□ -1.07
MCF2-206ENST00000446225 NUP155O75694 1391 aa8.36□□□□□ -1.07
MCF2-206ENST00000446225 ARHGAP33O14559 1287 aa8.36□□□□□ -1.07
MCF2-206ENST00000446225 TAF1CQ15572 869 aaPredicted RBP8.36□□□□□ -1.07
MCF2-206ENST00000446225 DMRTA1Q5VZB9 504 aa8.36□□□□□ -1.07
MCF2-206ENST00000446225 SLKQ9H2G2 1235 aaPredicted RBP8.36□□□□□ -1.07
MCF2-206ENST00000446225 ABCC3O15438 1527 aa8.36□□□□□ -1.07
MCF2-206ENST00000446225 PDGFAP04085 211 aa8.35□□□□□ -1.07
MCF2-206ENST00000446225 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.35□□□□□ -1.07
MCF2-206ENST00000446225 STAG2Q8N3U4 1231 aa8.35□□□□□ -1.07
MCF2-206ENST00000446225 RASGRP4Q8TDF6 673 aa8.35□□□□□ -1.07
MCF2-206ENST00000446225 BAP1Q92560 729 aa8.35□□□□□ -1.07
MCF2-206ENST00000446225 TRIM52Q96A61 297 aa8.35□□□□□ -1.07
MCF2-206ENST00000446225 TRIM55Q9BYV6 548 aa8.35□□□□□ -1.07
MCF2-206ENST00000446225 SIRPGQ9P1W8 387 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms