RNA–Protein interactions for RNA: ENST00000438964.6

ACTN1-204, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 3,043 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-204ENST00000438964 CHST3Q7LGC8 479 aa15.71■□□□□ 0.11
ACTN1-204ENST00000438964 IL17RAQ96F46 866 aa15.71■□□□□ 0.11
ACTN1-204ENST00000438964 ERO1AQ96HE7 468 aa15.71■□□□□ 0.11
ACTN1-204ENST00000438964 AATKQ6ZMQ8 1374 aa15.71■□□□□ 0.11
ACTN1-204ENST00000438964 E4F1Q66K89 784 aaPredicted RBP15.71■□□□□ 0.11
ACTN1-204ENST00000438964 NCOA5Q9HCD5 579 aaKnown RBP15.71■□□□□ 0.11
ACTN1-204ENST00000438964 ECHDC1Q9NTX5 307 aa15.71■□□□□ 0.11
ACTN1-204ENST00000438964 NPM1P06748 294 aaKnown RBP eCLIP15.7■□□□□ 0.1
ACTN1-204ENST00000438964 SYCP1Q15431 976 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 OTUD7BQ6GQQ9 843 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 PLPPR3Q6T4P5 718 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 DHX40Q8IX18 779 aaKnown RBP15.7■□□□□ 0.1
ACTN1-204ENST00000438964 DNAI1Q9UI46 699 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 FHOD1Q9Y613 1164 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 ARAP3Q8WWN8 1544 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 ME1P48163 572 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 RAB11FIP4Q86YS3 637 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 A0A1B0GVL5 298 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 POLA2Q14181 598 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.7■□□□□ 0.1
ACTN1-204ENST00000438964 IFNKQ9P0W0 207 aa15.7■□□□□ 0.1
ACTN1-204ENST00000438964 ELP1O95163 1332 aa15.69■□□□□ 0.1
ACTN1-204ENST00000438964 C9orf78Q9NZ63 289 aaPredicted RBP15.69■□□□□ 0.1
ACTN1-204ENST00000438964 PNMA6AP0CW24 399 aaPredicted RBP15.69■□□□□ 0.1
ACTN1-204ENST00000438964 PDCP20941 246 aa15.69■□□□□ 0.1
ACTN1-204ENST00000438964 PLA2G4AP47712 749 aa15.69■□□□□ 0.1
ACTN1-204ENST00000438964 AIMP1Q12904 312 aaKnown RBP15.69■□□□□ 0.1
ACTN1-204ENST00000438964 PPP1R13BQ96KQ4 1090 aa15.69■□□□□ 0.1
ACTN1-204ENST00000438964 USP28Q96RU2 1077 aa15.69■□□□□ 0.1
ACTN1-204ENST00000438964 PREX1Q8TCU6 1659 aa15.69■□□□□ 0.1
ACTN1-204ENST00000438964 RPS6KB1P23443 525 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 NBPF11Q86T75 865 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 C14orf37Q86TY3 774 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 EAF2Q96CJ1 260 aaPredicted RBP15.68■□□□□ 0.1
ACTN1-204ENST00000438964 XPO4Q9C0E2 1151 aaKnown RBP15.68■□□□□ 0.1
ACTN1-204ENST00000438964 ZSWIM4Q9H7M6 989 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 AOX1Q06278 1338 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 Q6ZUG5 572 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 FSIP1Q8NA03 581 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 SDF4Q9BRK5 362 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 A0A0G2JLW4 131 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 PRAMEF22A3QJZ6 481 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 GNAT3A8MTJ3 354 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 URI1O94763 535 aaPredicted RBP15.68■□□□□ 0.1
ACTN1-204ENST00000438964 GNL2Q13823 731 aaKnown RBP15.68■□□□□ 0.1
ACTN1-204ENST00000438964 STX1AQ16623 288 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 DPCR1Q3MIW9 517 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 ARMCX5Q6P1M9 558 aa15.68■□□□□ 0.1
ACTN1-204ENST00000438964 TRIM66O15016 1216 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 KINO60870 393 aaKnown RBP15.67■□□□□ 0.1
ACTN1-204ENST00000438964 LMOD1P29536 600 aaPredicted RBP15.67■□□□□ 0.1
ACTN1-204ENST00000438964 RESTQ13127 1097 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 MAP4K1Q92918 833 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 ADCY9O60503 1353 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 RAD51AP2Q09MP3 1159 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 DNAAF4Q8WXU2 420 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 LGR6Q9HBX8 967 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 GJB4Q9NTQ9 266 aa15.67■□□□□ 0.1
ACTN1-204ENST00000438964 PROSER3Q2NL68 480 aa15.66■□□□□ 0.1
ACTN1-204ENST00000438964 CCDC73Q6ZRK6 1079 aa15.66■□□□□ 0.1
ACTN1-204ENST00000438964 RBM43Q6ZSC3 357 aaKnown RBP15.66■□□□□ 0.1
ACTN1-204ENST00000438964 CALCOCO1Q9P1Z2 691 aa15.66■□□□□ 0.1
ACTN1-204ENST00000438964 FANCGO15287 622 aa15.66■□□□□ 0.1
ACTN1-204ENST00000438964 BMS1Q14692 1282 aaKnown RBP15.66■□□□□ 0.1
ACTN1-204ENST00000438964 SMARCE1Q969G3 411 aa15.66■□□□□ 0.1
ACTN1-204ENST00000438964 CARD6Q9BX69 1037 aa15.66■□□□□ 0.1
ACTN1-204ENST00000438964 CLTCQ00610 1675 aaKnown RBP15.66■□□□□ 0.1
ACTN1-204ENST00000438964 ATP1A3P13637 1013 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 CYP2C19P33261 490 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 C10orf67Q8IYJ2 551 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 MRFAP1L1Q96HT8 127 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 LCMT1Q9UIC8 334 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 TEFQ10587 303 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 SCRN1Q12765 414 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 BEND3Q5T5X7 828 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 KRBA2Q6ZNG9 492 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 POLR3DP05423 398 aaPredicted RBP15.65■□□□□ 0.1
ACTN1-204ENST00000438964 PSMA5P28066 241 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 APOBRQ0VD83 1088 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 SKIDA1Q1XH10 827 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 DNAJC2Q99543 621 aaKnown RBP15.65■□□□□ 0.1
ACTN1-204ENST00000438964 TM6SF1Q9BZW5 370 aa15.65■□□□□ 0.1
ACTN1-204ENST00000438964 STK11IPQ8N1F8 1099 aa15.64■□□□□ 0.09
ACTN1-204ENST00000438964 UBXN4Q92575 508 aa15.64■□□□□ 0.09
ACTN1-204ENST00000438964 EVI5LQ96CN4 794 aa15.64■□□□□ 0.09
ACTN1-204ENST00000438964 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.64■□□□□ 0.094e-9■■□□□ 14.3
ACTN1-204ENST00000438964 H2AFXP16104 143 aaPredicted RBP15.64■□□□□ 0.09
ACTN1-204ENST00000438964 IPO4Q8TEX9 1081 aaKnown RBP15.64■□□□□ 0.09
ACTN1-204ENST00000438964 CEP170BQ9Y4F5 1589 aaPredicted RBP15.63■□□□□ 0.09
ACTN1-204ENST00000438964 ANKRD65E5RJM6 399 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 SASH3O75995 380 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 SASH1O94885 1247 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 SFPQP23246 707 aaKnown RBP eCLIP15.63■□□□□ 0.097e-7■■■■□ 21
ACTN1-204ENST00000438964 MNS1Q8NEH6 495 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 MAP3K2Q9Y2U5 619 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 SETD1BQ9UPS6 1966 aaKnown RBP15.63■□□□□ 0.09
ACTN1-204ENST00000438964 TMCO3Q6UWJ1 677 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 OSCARQ8IYS5 282 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 CEP57L1Q8IYX8 460 aa15.63■□□□□ 0.09
ACTN1-204ENST00000438964 NFATC2IPQ8NCF5 419 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms