RNA–Protein interactions for RNA: ENST00000302190.8

SDC2-201, Transcript of syndecan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC2, Length 3,759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-201ENST00000302190 XIRP1Q702N8 1843 aaKnown RBP16.57■□□□□ 0.24
SDC2-201ENST00000302190 HIP1O00291 1037 aa16.57■□□□□ 0.24
SDC2-201ENST00000302190 NOLC1Q14978 699 aaKnown RBP eCLIP16.57■□□□□ 0.24
SDC2-201ENST00000302190 ZBTB9Q96C00 473 aa16.57■□□□□ 0.24
SDC2-201ENST00000302190 SPATA31A3Q5VYP0 1347 aa16.57■□□□□ 0.24
SDC2-201ENST00000302190 ANAPC15P60006 121 aa16.56■□□□□ 0.24
SDC2-201ENST00000302190 PTH1RQ03431 593 aa16.56■□□□□ 0.24
SDC2-201ENST00000302190 HSP90AB3PQ58FF7 597 aa16.56■□□□□ 0.24
SDC2-201ENST00000302190 EVI5LQ96CN4 794 aa16.56■□□□□ 0.24
SDC2-201ENST00000302190 HMGN5P82970 282 aaKnown RBP16.56■□□□□ 0.24
SDC2-201ENST00000302190 CDK12Q9NYV4 1490 aaPredicted RBP16.56■□□□□ 0.24
SDC2-201ENST00000302190 SGSM2O43147 1006 aa16.56■□□□□ 0.24
SDC2-201ENST00000302190 BRD1O95696 1058 aa16.56■□□□□ 0.24
SDC2-201ENST00000302190 NWD1Q149M9 1564 aa16.56■□□□□ 0.24
SDC2-201ENST00000302190 PRAMEF22A3QJZ6 481 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 POLR3DP05423 398 aaPredicted RBP16.55■□□□□ 0.24
SDC2-201ENST00000302190 ZNF165P49910 485 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 TOM1L2Q6ZVM7 507 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 CCDC186Q7Z3E2 898 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 NFATC2IPQ8NCF5 419 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 ERCC4Q92889 916 aaPredicted RBP16.55■□□□□ 0.24
SDC2-201ENST00000302190 BICC1Q9H694 974 aaKnown RBP16.55■□□□□ 0.24
SDC2-201ENST00000302190 MTMR7Q9Y216 660 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 GRM8O00222 908 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 ANKRD1Q15327 319 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 ADCK5Q3MIX3 580 aa16.55■□□□□ 0.24
SDC2-201ENST00000302190 NCBP3Q53F19 620 aaKnown RBP16.55■□□□□ 0.24
SDC2-201ENST00000302190 NOL7Q9UMY1 257 aaKnown RBP16.55■□□□□ 0.24
SDC2-201ENST00000302190 LARP1Q6PKG0 1096 aaKnown RBP16.54■□□□□ 0.24
SDC2-201ENST00000302190 PDILTQ8N807 584 aa16.54■□□□□ 0.24
SDC2-201ENST00000302190 DNAJC25Q9H1X3 360 aa16.54■□□□□ 0.24
SDC2-201ENST00000302190 ANO6Q4KMQ2 910 aa16.54■□□□□ 0.24
SDC2-201ENST00000302190 CREB3L3Q68CJ9 461 aa16.54■□□□□ 0.24
SDC2-201ENST00000302190 SH2B1Q9NRF2 756 aaPredicted RBP16.54■□□□□ 0.24
SDC2-201ENST00000302190 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.54■□□□□ 0.245e-18■□□□□ 8.1
SDC2-201ENST00000302190 V9GYY5 206 aaPredicted RBP16.54■□□□□ 0.24
SDC2-201ENST00000302190 ZDHHC9Q9Y397 364 aa16.54■□□□□ 0.24
SDC2-201ENST00000302190 HSP90AA4PQ58FG1 418 aa16.53■□□□□ 0.24
SDC2-201ENST00000302190 CCDC144CPQ8IYA2 1237 aa16.53■□□□□ 0.24
SDC2-201ENST00000302190 RASSF8Q8NHQ8 419 aa16.53■□□□□ 0.24
SDC2-201ENST00000302190 PTGS1P23219 599 aa16.53■□□□□ 0.24
SDC2-201ENST00000302190 TTLL5Q6EMB2 1281 aa16.53■□□□□ 0.24
SDC2-201ENST00000302190 PROSER3Q2NL68 480 aa16.52■□□□□ 0.24
SDC2-201ENST00000302190 CCDC112Q8NEF3 446 aa16.52■□□□□ 0.24
SDC2-201ENST00000302190 INTS4Q96HW7 963 aaKnown RBP16.52■□□□□ 0.24
SDC2-201ENST00000302190 CLIP2Q9UDT6 1046 aa16.52■□□□□ 0.23
SDC2-201ENST00000302190 MAP3K5Q99683 1374 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 TRIM29Q14134 588 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 CPLX2Q6PUV4 134 aaKnown RBP16.51■□□□□ 0.23
SDC2-201ENST00000302190 KSR2Q6VAB6 950 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 PDCL2Q8N4E4 241 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 NEK1Q96PY6 1258 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 SCAND2PQ9GZW5 306 aaPredicted RBP16.51■□□□□ 0.23
SDC2-201ENST00000302190 BTG4Q9NY30 223 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 IDH1O75874 414 aaKnown RBP16.51■□□□□ 0.23
SDC2-201ENST00000302190 HSPA4P34932 840 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 BRPF1P55201 1214 aaPredicted RBP16.51■□□□□ 0.23
SDC2-201ENST00000302190 PLCD3Q8N3E9 789 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 IGSF1Q8N6C5 1336 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 GTF2E1P29083 439 aaPredicted RBP16.51■□□□□ 0.23
SDC2-201ENST00000302190 TTC39AQ5SRH9 613 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 RUFY3Q7L099 469 aa16.51■□□□□ 0.23
SDC2-201ENST00000302190 RGPD2P0DJD1 1756 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 LARGE1O95461 756 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 LMBR1LQ6UX01 489 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 ANKRD13DQ6ZTN6 518 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 Q6ZUG5 572 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 CDC37L1Q7L3B6 337 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 CEP126Q9P2H0 1117 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 JAK2O60674 1132 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 TIMM10P62072 90 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 PPP1R9BQ96SB3 815 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 TMX1Q9H3N1 280 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 HYPKQ9NX55 129 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 LTN1O94822 1766 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 A0A087WWV3 80 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 IFIT1P09914 478 aaKnown RBP16.5■□□□□ 0.23
SDC2-201ENST00000302190 PPP4R3BQ5MIZ7 849 aa16.5■□□□□ 0.23
SDC2-201ENST00000302190 RAD50Q92878 1312 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 GPTP24298 496 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 ME3Q16798 604 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 CCDC57Q2TAC2 916 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 CFAP45Q9UL16 551 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 VGLL3A8MV65 326 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 TNNT1P13805 278 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 SUCLG2Q96I99 432 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 SEC62Q99442 399 aaKnown RBP16.49■□□□□ 0.23
SDC2-201ENST00000302190 ERBB3P21860 1342 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 DYNC1I1O14576 645 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 PIBF1Q8WXW3 757 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 NCOA5Q9HCD5 579 aaKnown RBP16.49■□□□□ 0.23
SDC2-201ENST00000302190 CNNM1Q9NRU3 951 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 RGPD5Q99666 1765 aa16.49■□□□□ 0.23
SDC2-201ENST00000302190 CCDC171Q6TFL3 1326 aa16.48■□□□□ 0.23
SDC2-201ENST00000302190 TYRO3Q06418 890 aa16.48■□□□□ 0.23
SDC2-201ENST00000302190 TFCP2Q12800 502 aa16.48■□□□□ 0.23
SDC2-201ENST00000302190 FSIP1Q8NA03 581 aa16.48■□□□□ 0.23
SDC2-201ENST00000302190 IL25Q9H293 177 aa16.48■□□□□ 0.23
SDC2-201ENST00000302190 TNS3Q68CZ2 1445 aa16.48■□□□□ 0.23
SDC2-201ENST00000302190 EAF2Q96CJ1 260 aaPredicted RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms