RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SSR1P43307 286 aaKnown RBP21.42■■□□□ 1.02
PCDH1-201ENST00000287008 SAMM50Q9Y512 469 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 ZBTB43O43298 467 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 NEBLO76041 1014 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 SDSP20132 328 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 SKIDA1Q1XH10 827 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 MCMDC2Q4G0Z9 681 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 KIAA1328Q86T90 577 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 CCNL1Q9UK58 526 aaPredicted RBP21.42■■□□□ 1.02
PCDH1-201ENST00000287008 CTAGE5O15320 804 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 NF2P35240 595 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 AMPD3Q01432 767 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 IL27Q8NEV9 243 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 ANKRD2Q9GZV1 360 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 SLAIN2Q9P270 581 aa21.42■■□□□ 1.02
PCDH1-201ENST00000287008 CACNA2D4Q7Z3S7 1137 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 TFIP11Q9UBB9 837 aaKnown RBP21.41■■□□□ 1.02
PCDH1-201ENST00000287008 SOS1Q07889 1333 aaPredicted RBP21.41■■□□□ 1.02
PCDH1-201ENST00000287008 NUCB1Q02818 461 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 KRT24Q2M2I5 525 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 FSIP1Q8NA03 581 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 TCOF1Q13428 1488 aaKnown RBP21.41■■□□□ 1.02
PCDH1-201ENST00000287008 IGHDP01880 384 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 PICALMQ13492 652 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 VPS36Q86VN1 386 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 TAF4BQ92750 862 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 PARD3Q8TEW0 1356 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 GJB2P29033 226 aa21.41■■□□□ 1.02
PCDH1-201ENST00000287008 IFIT1BQ5T764 474 aaKnown RBP21.4■■□□□ 1.02
PCDH1-201ENST00000287008 TSPYL6Q8N831 410 aa21.4■■□□□ 1.02
PCDH1-201ENST00000287008 STK32BQ9NY57 414 aa21.4■■□□□ 1.02
PCDH1-201ENST00000287008 VEZTQ9HBM0 779 aa21.4■■□□□ 1.02
PCDH1-201ENST00000287008 STX6O43752 255 aa21.4■■□□□ 1.02
PCDH1-201ENST00000287008 CCDC112Q8NEF3 446 aa21.4■■□□□ 1.02
PCDH1-201ENST00000287008 CCDC183Q5T5S1 534 aa21.4■■□□□ 1.02
PCDH1-201ENST00000287008 ZNF790Q6PG37 636 aa21.4■■□□□ 1.02
PCDH1-201ENST00000287008 SFPQP23246 707 aaKnown RBP eCLIP21.39■■□□□ 1.02
PCDH1-201ENST00000287008 PCDHB15Q9Y5E8 787 aa21.39■■□□□ 1.02
PCDH1-201ENST00000287008 EIF4G3O43432 1585 aaKnown RBP21.39■■□□□ 1.01
PCDH1-201ENST00000287008 CETN1Q12798 172 aa21.39■■□□□ 1.01
PCDH1-201ENST00000287008 CNBD1Q8NA66 436 aa21.39■■□□□ 1.01
PCDH1-201ENST00000287008 AXDND1Q5T1B0 1012 aaPredicted RBP21.39■■□□□ 1.01
PCDH1-201ENST00000287008 PYM1Q9BRP8 204 aaKnown RBP21.39■■□□□ 1.01
PCDH1-201ENST00000287008 PAG1Q9NWQ8 432 aa21.39■■□□□ 1.01
PCDH1-201ENST00000287008 PARP10Q53GL7 1025 aa21.39■■□□□ 1.01
PCDH1-201ENST00000287008 RBM8AQ9Y5S9 174 aaKnown RBP21.39■■□□□ 1.01
PCDH1-201ENST00000287008 STXBP4Q6ZWJ1 553 aa21.38■■□□□ 1.01
PCDH1-201ENST00000287008 DDX19AQ9NUU7 478 aaKnown RBP21.38■■□□□ 1.01
PCDH1-201ENST00000287008 SH3TC1Q8TE82 1336 aa21.38■■□□□ 1.01
PCDH1-201ENST00000287008 PPFIA3O75145 1194 aa21.38■■□□□ 1.01
PCDH1-201ENST00000287008 LIG1P18858 919 aa21.38■■□□□ 1.01
PCDH1-201ENST00000287008 TBC1D2Q9BYX2 928 aa21.38■■□□□ 1.01
PCDH1-201ENST00000287008 SPA17Q15506 151 aa21.37■■□□□ 1.01
PCDH1-201ENST00000287008 CCDC148Q8NFR7 591 aa21.37■■□□□ 1.01
PCDH1-201ENST00000287008 GOLGA6L10A6NI86 522 aa21.37■■□□□ 1.01
PCDH1-201ENST00000287008 RBM25P49756 843 aaKnown RBP21.37■■□□□ 1.01
PCDH1-201ENST00000287008 RTN1Q16799 776 aa21.37■■□□□ 1.01
PCDH1-201ENST00000287008 SBNO1A3KN83 1393 aa21.37■■□□□ 1.01
PCDH1-201ENST00000287008 MAGEB6P1A0A0J9YX57 407 aa21.36■■□□□ 1.01
PCDH1-201ENST00000287008 RBM26Q5T8P6 1007 aaKnown RBP21.36■■□□□ 1.01
PCDH1-201ENST00000287008 IQCEQ6IPM2 695 aa21.36■■□□□ 1.01
PCDH1-201ENST00000287008 CCDC150Q8NCX0 1101 aa21.36■■□□□ 1.01
PCDH1-201ENST00000287008 GNAT2P19087 354 aa21.36■■□□□ 1.01
PCDH1-201ENST00000287008 PANK2Q9BZ23 570 aa21.36■■□□□ 1.01
PCDH1-201ENST00000287008 ARHGEF10O15013 1369 aa21.36■■□□□ 1.01
PCDH1-201ENST00000287008 TMEM87AQ8NBN3 555 aa21.36■■□□□ 1.01
PCDH1-201ENST00000287008 SSFA2P28290 1259 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 JAKMIP3Q5VZ66 844 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 EIF2AK4Q9P2K8 1649 aaKnown RBP21.35■■□□□ 1.01
PCDH1-201ENST00000287008 RIMBP2O15034 1052 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 LDHBP07195 334 aaKnown RBP21.35■■□□□ 1.01
PCDH1-201ENST00000287008 MCM9Q9NXL9 1143 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 TTC41PQ6P2S7 1318 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 TCEANC2Q96MN5 208 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 GRM1Q13255 1194 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 FAM98CQ17RN3 349 aaKnown RBP21.35■■□□□ 1.01
PCDH1-201ENST00000287008 TCERG1LQ5VWI1 586 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 BABAM1Q9NWV8 329 aa21.35■■□□□ 1.01
PCDH1-201ENST00000287008 BMP15O95972 392 aa21.34■■□□□ 1.01
PCDH1-201ENST00000287008 SEPT7Q16181 437 aaKnown RBP21.34■■□□□ 1.01
PCDH1-201ENST00000287008 ERMNQ8TAM6 284 aa21.34■■□□□ 1.01
PCDH1-201ENST00000287008 FAM89AQ96GI7 184 aa21.34■■□□□ 1.01
PCDH1-201ENST00000287008 LRRC2Q9BYS8 371 aa21.34■■□□□ 1.01
PCDH1-201ENST00000287008 ESYT1Q9BSJ8 1104 aa21.34■■□□□ 1.01
PCDH1-201ENST00000287008 CTTNBP2Q8WZ74 1663 aa21.34■■□□□ 1.01
PCDH1-201ENST00000287008 CKAP2LQ8IYA6 745 aa21.34■■□□□ 1.01
PCDH1-201ENST00000287008 ERLIN1O75477 346 aa21.33■■□□□ 1.01
PCDH1-201ENST00000287008 EDC4Q6P2E9 1401 aaKnown RBP21.33■■□□□ 1.01
PCDH1-201ENST00000287008 LRRC27Q9C0I9 530 aa21.33■■□□□ 1.01
PCDH1-201ENST00000287008 CCDC102BQ68D86 513 aa21.33■■□□□ 1.01
PCDH1-201ENST00000287008 ZSCAN16Q9H4T2 348 aaPredicted RBP21.33■■□□□ 1.01
PCDH1-201ENST00000287008 PIK3C2GO75747 1445 aa21.33■■□□□ 1.01
PCDH1-201ENST00000287008 TOP1P11387 765 aaKnown RBP21.33■■□□□ 1.01
PCDH1-201ENST00000287008 PRIM1P49642 420 aaKnown RBP21.33■■□□□ 1.01
PCDH1-201ENST00000287008 MTIF2P46199 727 aaKnown RBP21.33■■□□□ 1
PCDH1-201ENST00000287008 KANK3Q6NY19 840 aa21.33■■□□□ 1
PCDH1-201ENST00000287008 PLBD2Q8NHP8 589 aa21.33■■□□□ 1
PCDH1-201ENST00000287008 HOXB7P09629 217 aa21.32■■□□□ 1
PCDH1-201ENST00000287008 MTERF4Q7Z6M4 381 aaKnown RBP21.32■■□□□ 1
PCDH1-201ENST00000287008 ALG1Q9BT22 464 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms