RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	UTP20	O75691	2785 aa	Known RBP	4.21	□□□□□ -1.74
ATXN3-238	ENST00000556288	CFAP46	Q8IYW2	2715 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	LOC100653049	A0A140TA62	436 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	FAM234B	A2RU67	622 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	C5orf58	C9J3I9	102 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	PRSS44	E7EML9	344 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288		H0Y3Z8	333 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	RAB27B	O00194	218 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ZNF195	O14628	629 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	BCKDK	O14874	412 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ANGPT2	O15123	496 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	T	O15178	435 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SEC14L5	O43304	696 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	HCRTR2	O43614	444 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	RGS10	O43665	173 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	FADS1	O60427	444 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	EDF1	O60869	148 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	TRIM3	O75382	744 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	STX11	O75558	287 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	KRT34	O76011	436 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	GLS	O94925	669 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	NKX2-2	O95096	273 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	KRT75	O95678	551 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	C1QC	P02747	245 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	MT-ND5	P03915	603 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	FES	P07332	822 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	NDUFB7	P17568	137 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	CCNA2	P20248	432 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ELAVL4	P26378	380 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	PRKAR1B	P31321	381 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	RYK	P34925	604 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	LIPA	P38571	399 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	MDH1	P40925	334 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	FRK	P42685	505 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	CDKN2C	P42773	168 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	CA7	P43166	264 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	PTDSS1	P48651	473 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	KHK	P50053	298 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ZNF41	P51814	821 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	CBX1	P83916	185 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	FOXO1	Q12778	655 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	FOXD4	Q12950	439 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SNTA1	Q13424	505 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	NDUFAF6	Q330K2	333 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	KRTAP15-1	Q3LI76	137 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	DCST2	Q5T1A1	773 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	RAET1L	Q5VY80	246 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SLC2A7	Q6PXP3	512 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ENPP6	Q6UWR7	440 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	PLXDC2	Q6UX71	529 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	KCTD20	Q7Z5Y7	419 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	IFNE	Q86WN2	208 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	CCDC71	Q8IV32	467 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SIAH3	Q8IW03	269 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	WDSUB1	Q8N9V3	476 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	OR8J2	Q8NGG1	315 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	B4GALNT2	Q8NHY0	566 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ZNF563	Q8TA94	476 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	NEIL3	Q8TAT5	605 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SFXN5	Q8TD22	340 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	CA5BP1	Q8WTZ4	195 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	IPCEF1	Q8WWN9	437 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	RND1	Q92730	232 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	TESC	Q96BS2	214 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ROPN1L	Q96C74	230 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SDCCAG3	Q96C92	435 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	R3HDM4	Q96D70	268 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SPDL1	Q96EA4	605 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	GIMAP5	Q96F15	307 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	TMEM41A	Q96HV5	264 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SNX22	Q96L94	193 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SFXN2	Q96NB2	322 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SECISBP2	Q96T21	854 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	STAC	Q99469	402 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SDF2	Q99470	211 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	BARD1	Q99728	777 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	ELAC2	Q9BQ52	826 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	THUMPD3	Q9BV44	507 aa	Known RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	HOXD1	Q9GZZ0	328 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	TP63	Q9H3D4	680 aa	Predicted RBP	4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	UBQLN4	Q9NRR5	601 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	SERTAD4	Q9NUC0	356 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	TBC1D23	Q9NUY8	699 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	BTNL2	Q9UIR0	455 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	FBXL2	Q9UKC9	423 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	CARD8	Q9Y2G2	431 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	C15orf41	Q9Y2V0	281 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	MEMO1	Q9Y316	297 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	WIF1	Q9Y5W5	379 aa		4.2	□□□□□ -1.74
ATXN3-238	ENST00000556288	TENM4	Q6N022	2769 aa		4.19	□□□□□ -1.74
ATXN3-238	ENST00000556288	HELZ2	Q9BYK8	2649 aa	Known RBP	4.19	□□□□□ -1.74
ATXN3-238	ENST00000556288	NKX2-6	A6NCS4	301 aa		4.19	□□□□□ -1.74
ATXN3-238	ENST00000556288	LRRC3C	A6NJW4	275 aa		4.19	□□□□□ -1.74
ATXN3-238	ENST00000556288	EVPLL	A8MZ36	301 aa		4.19	□□□□□ -1.74
ATXN3-238	ENST00000556288	CLIC1	O00299	241 aa		4.19	□□□□□ -1.74
ATXN3-238	ENST00000556288	ANKRD28	O15084	1053 aa		4.19	□□□□□ -1.74
ATXN3-238	ENST00000556288	ZIC3	O60481	467 aa		4.19	□□□□□ -1.74

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