RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 HCN1O60741 890 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 BMP7P18075 431 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 LIPAP38571 399 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 PTGDSP41222 190 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 P2RX1P51575 399 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 FOXK2Q01167 660 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 EFR3AQ14156 821 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 OR52L1Q8NGH7 329 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 LGALS12Q96DT0 336 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 YIPF6Q96EC8 236 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 LOC400499M0QZD8 3231 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 EML6Q6ZMW3 1958 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 ALPK2Q86TB3 2170 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 CCDC187A0A096LP49 1063 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 PRODHO43272 600 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 ITGA10O75578 1167 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 PNMTP11086 282 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 OTX2P32243 289 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 TGFBR2P37173 567 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 SOX3P41225 446 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 SLC6A8P48029 635 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 QPRTQ15274 297 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 STPG1Q5TH74 334 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 MEDAGQ5VYS4 303 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 PLBD1Q6P4A8 553 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 OR52I1Q8NGK6 324 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 ZPBPQ9BS86 351 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 TIMMDC1Q9NPL8 285 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 MED11Q9P086 117 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 ADAM18Q9Y3Q7 739 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 PCDHGA3Q9Y5H0 932 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 PCDHGA1Q9Y5H4 931 aa16.75■□□□□ 0.27
USP39-201ENST00000323701 A0A1W2PPW3 197 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 FBXO45P0C2W1 286 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 Q0VFX4 171 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 AQP6Q13520 282 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 CPAMD8Q8IZJ3 1885 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 ZNF420Q8TAQ5 688 aaPredicted RBP16.74■□□□□ 0.27
USP39-201ENST00000323701 PTP4A1Q93096 173 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 TAAR8Q969N4 342 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 OTULINQ96BN8 352 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 PLEKHA8Q96JA3 519 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 DCUN1D5Q9BTE7 237 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 TMEM43Q9BTV4 400 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 FBXL4Q9UKA2 621 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 OR7A10O76100 309 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 NOS3P29474 1203 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 PSPHP78330 225 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 CBFBQ13951 182 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 ZNF74Q16587 644 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 ARSKQ6UWY0 536 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 RTL4Q6ZR62 310 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 CYB561A3Q8NBI2 242 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 MOSPD2Q8NHP6 518 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 TMCO6Q96DC7 493 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 RNFT2Q96EX2 444 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 SLC19A3Q9BZV2 496 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 MMP25Q9NPA2 562 aa16.74■□□□□ 0.27
USP39-201ENST00000323701 NSG1A0A0A6YYJ2 146 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 SPAARA0A1B0GVQ0 90 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 ZNF701M0R085 212 aaPredicted RBP16.73■□□□□ 0.27
USP39-201ENST00000323701 IMPA2O14732 288 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 HMGN1P05114 100 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 CLUP10909 449 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 NAGAP17050 411 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 PGCP20142 388 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 GRK5P34947 590 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 RPS5P46782 204 aaKnown RBP16.73■□□□□ 0.27
USP39-201ENST00000323701 RPS4XP62701 263 aaKnown RBP16.73■□□□□ 0.27
USP39-201ENST00000323701 CTF1Q16619 201 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 ZNF791Q3KP31 576 aaPredicted RBP16.73■□□□□ 0.27
USP39-201ENST00000323701 NDUFAF7Q7L592 441 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 ADGRG3Q86Y34 549 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 RPL3LQ92901 407 aaKnown RBP16.73■□□□□ 0.27
USP39-201ENST00000323701 SPACA9Q96E40 222 aaPredicted RBP16.73■□□□□ 0.27
USP39-201ENST00000323701 TMEM80Q96HE8 168 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 CMC2Q9NRP2 79 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 MED17Q9NVC6 651 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 CHCHD3Q9NX63 227 aaKnown RBP16.73■□□□□ 0.27
USP39-201ENST00000323701 SEC14L4Q9UDX3 406 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 GVINP1Q7Z2Y8 2422 aa16.73■□□□□ 0.27
USP39-201ENST00000323701 MED12Q93074 2177 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 TRIM64BA6NI03 449 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 MTNR1AP48039 350 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 TMBIM6P55061 237 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 CDH11P55287 796 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 NTRK2Q16620 822 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 TIGD6Q17RP2 521 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 RPL13AP3Q6NVV1 102 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 CXXC5Q7LFL8 322 aaKnown RBP16.72■□□□□ 0.27
USP39-201ENST00000323701 NUP54Q7Z3B4 507 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 OR4F15Q8NGB8 312 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 NACC2Q96BF6 587 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 KLRF1Q9NZS2 232 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 CHRNA9Q9UGM1 479 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 ENPP5Q9UJA9 477 aa16.72■□□□□ 0.27
USP39-201ENST00000323701 FARSAQ9Y285 508 aaKnown RBP16.72■□□□□ 0.27
USP39-201ENST00000323701 LSM2Q9Y333 95 aaKnown RBP16.72■□□□□ 0.27
USP39-201ENST00000323701 MRPS18BQ9Y676 258 aaKnown RBP16.72■□□□□ 0.27
USP39-201ENST00000323701 SHISA8B8ZZ34 492 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms