RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 BCAS1O75363 584 aaPredicted RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 PTP4A3O75365 173 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 TRMUO75648 421 aaKnown RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 HTR1AP08908 422 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 ZNF28P17035 718 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 WT1P19544 449 aaPredicted RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 PGCP20142 388 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 PCMT1P22061 227 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 GRK5P34947 590 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 SLC15A1P46059 708 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 TMBIM6P55061 237 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 EMX1Q04741 257 aaPredicted RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 SKP2Q13309 424 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 RAB39AQ14964 217 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 NEDD8Q15843 81 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 SMN1Q16637 294 aaKnown RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 CNPY1Q3B7I2 92 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 KLHL22Q53GT1 634 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 TMEM164Q5U3C3 297 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 RNLSQ5VYX0 342 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 GTF2IRD2BQ6EKJ0 949 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 XAF1Q6GPH4 301 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 ACSM5Q6NUN0 579 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 FAM198BQ6UWH4 519 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 C6orf15Q6UXA7 325 aaPredicted RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 RTL4Q6ZR62 310 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 GTF2IRD2Q86UP8 949 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 VASH2Q86V25 355 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 DTX1Q86Y01 620 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 KIF18BQ86Y91 864 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 CCDC103Q8IW40 242 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 NLGN4XQ8N0W4 816 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 CADM2Q8N3J6 435 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 TCEANCQ8N8B7 351 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 OR2T33Q8NG76 320 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 OR13F1Q8NGS4 319 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 TMEM163Q8TC26 289 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 M1APQ8TC57 530 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 SLC22A8Q8TCC7 542 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 EXTL1Q92935 676 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 RFKQ969G6 155 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 TMIGD2Q96BF3 282 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 PLEKHA8Q96JA3 519 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 SIGLEC11Q96RL6 698 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 WDR77Q9BQA1 342 aaPredicted RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 RACGAP1Q9H0H5 632 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 ZNF700Q9H0M5 742 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 CXorf56Q9H5V9 222 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 SDHAF3Q9NRP4 125 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 TBC1D23Q9NUY8 699 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 MRPS18AQ9NVS2 196 aaKnown RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 PAK1IP1Q9NWT1 392 aaPredicted RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 CNIH4Q9P003 139 aa9.5□□□□□ -0.89
LIG3-203ENST00000585370 SPENQ96T58 3664 aaKnown RBP9.5□□□□□ -0.89
LIG3-203ENST00000585370 IGHV3-20A0A0C4DH32 117 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 TRBV11-1A0A0K0K1C0 115 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ELOA3DA6NLF2 546 aaPredicted RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 TLX2O43763 284 aaPredicted RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 MT-ND2P03891 347 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ITGB2P05107 769 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ICAM2P13598 275 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 DCKP27707 260 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 MSX1P28360 303 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 FOLR3P41439 243 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 SLC1A3P43003 542 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 GPR4P46093 362 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 HTR3AP46098 478 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ST13P50502 369 aaKnown RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 P2RX1P51575 399 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 SUMO3P55854 103 aaPredicted RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 C17orf67Q0P5P2 114 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ST3GAL4Q11206 333 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 TMED1Q13445 227 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 CBFBQ13951 182 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 TBCEQ15813 527 aaPredicted RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 PGGHGQ32M88 737 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ELOA3BQ3SY89 546 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 SYT6Q5T7P8 510 aaPredicted RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 UBE2UQ5VVX9 321 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 PLAG1Q6DJT9 500 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 LCN10Q6JVE6 187 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 SMARCD3Q6STE5 483 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 KIRREL2Q6UWL6 708 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 B3GNT6Q6ZMB0 384 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 WDR88Q6ZMY6 472 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 AHSA2Q719I0 299 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 CLVS1Q8IUQ0 354 aaPredicted RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 DND1Q8IYX4 353 aaKnown RBP9.49□□□□□ -0.89
LIG3-203ENST00000585370 LNX2Q8N448 690 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ELOA3Q8NG57 546 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 OR5W2Q8NH69 310 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 GRHL3Q8TE85 626 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 FAR1Q8WVX9 515 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 LIPHQ8WWY8 451 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 C3orf49Q96BT1 292 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 ARSGQ96EG1 525 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 SGTBQ96EQ0 304 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 IL4I1Q96RQ9 567 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 LMF1Q96S06 567 aa9.49□□□□□ -0.89
LIG3-203ENST00000585370 TSC22D3Q99576 134 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms