RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 LIAT1Q6ZQX7 453 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 RBPMS2Q6ZRY4 209 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 ABI3BPQ7Z7G0 1075 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 DOLPP1Q86YN1 238 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CMTM1Q8IZ96 169 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 VWA5B2Q8N398 1253 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MFSD4AQ8N468 514 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR5T2Q8NGG2 359 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR2T4Q8NH00 348 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR4K15Q8NH41 348 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR51Q1Q8NH59 317 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CPNE4Q96A23 557 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 RPEQ96AT9 228 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TCEAL4Q96EI5 215 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PURBQ96QR8 312 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 HSD17B14Q9BPX1 270 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 HDHD2Q9H0R4 259 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ISCUQ9H1K1 167 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 UBQLN4Q9NRR5 601 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MKS1Q9NXB0 559 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PKIGQ9Y2B9 76 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 A0A1W2PQJ5 194 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LRRC10BA6NIK2 292 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 AHRRA9YTQ3 701 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TARM1B6A8C7 271 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ADAMDEC1O15204 470 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PNLIPP16233 465 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 AKR1C4P17516 323 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 VDAC1P21796 283 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PRKACBP22694 351 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SSTR1P30872 391 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 THBS3P49746 956 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CCNIQ14094 377 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 INPP5JQ15735 1006 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 PPP1R3AQ16821 1122 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 RRN3P1Q2M238 152 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TMEM176BQ3YBM2 270 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 RAB41Q5JT25 222 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 RTL6Q6ICC9 239 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 C11orf63Q6NUN7 778 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ADGRD1Q6QNK2 874 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PGAM4Q8N0Y7 254 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PLD6Q8N2A8 252 aaKnown RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 OR52K1Q8NGK4 314 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SLC44A1Q8WWI5 657 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 FAM168AQ92567 244 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MARVELD3Q96A59 401 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MNTQ99583 582 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ALG8Q9BVK2 526 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PINK1Q9BXM7 581 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LHX9Q9NQ69 397 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 XPNPEP1Q9NQW7 623 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SLC22A7Q9Y694 548 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CROCC2H7BZ55 1655 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 DNAJC13O75165 2243 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PNMA8CA0A1B0GUJ8 204 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 YJEFN3A6XGL0 299 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ADAM20O43506 726 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ADAP1O75689 374 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SPATA31C1P0DKV0 1188 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CDH1P12830 882 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TCN1P20061 433 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 MAGP20916 626 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GALNSP34059 522 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PBX1P40424 430 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 EDDM3BP56851 147 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 FAM189BP81408 668 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SPIBQ01892 262 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 FAM209BQ5JX69 171 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PQLC1Q8N2U9 271 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CSNK2A3Q8NEV1 391 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ZNF764Q96H86 408 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 TSSK3Q96PN8 268 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 RASL11BQ9BPW5 248 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TMEM59Q9BXS4 323 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 AKTIPQ9H8T0 292 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GALNT9Q9HCQ5 603 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SLC2A8Q9NY64 477 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ONECUT1Q9UBC0 465 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 INTS6Q9UL03 887 aaKnown RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 GPR45Q9Y5Y3 372 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 NOTCH2Q04721 2471 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 C2orf78A6NCI8 922 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 BLOC1S5-TXNDC5H3BN57 136 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 EML1O00423 815 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 HCRTR1O43613 425 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TNFRSF21O75509 655 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CCNKO75909 580 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ZNF432O94892 652 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LCN1P31025 176 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PPP5CP53041 499 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 NKX3-2P78367 333 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 NAAAQ02083 359 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MFAP5Q13361 173 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PCOLCEQ15113 449 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LTB4RQ15722 352 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GUCA2BQ16661 112 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TMEM52BQ4KMG9 183 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CTSL3PQ5NE16 218 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LIPMQ5VYY2 423 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms