RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DCAF8L2P0C7V8 631 aa7.36□□□□□ -1.23
USH2A-202ENST00000366942 FAM9AQ8IZU1 332 aaPredicted RBP7.34□□□□□ -1.23
USH2A-202ENST00000366942 NISCHQ9Y2I1 1504 aa6.66□□□□□ -1.34
USH2A-202ENST00000366942 MYT1LQ9UL68 1186 aa6.59□□□□□ -1.35
USH2A-202ENST00000366942 APLP2Q06481 763 aa6.57□□□□□ -1.36
USH2A-202ENST00000366942 AEBP2Q6ZN18 517 aaPredicted RBP6.48□□□□□ -1.37
USH2A-202ENST00000366942 ESF1Q9H501 851 aaKnown RBP6.42□□□□□ -1.38
USH2A-202ENST00000366942 NPM1P06748 294 aaKnown RBP eCLIP6.4□□□□□ -1.38
USH2A-202ENST00000366942 FOXD1Q16676 465 aa6.35□□□□□ -1.39
USH2A-202ENST00000366942 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.34□□□□□ -1.39
USH2A-202ENST00000366942 HNRNPUL2Q1KMD3 747 aaKnown RBP6.34□□□□□ -1.39
USH2A-202ENST00000366942 DCAF8L1A6NGE4 600 aa6.34□□□□□ -1.4
USH2A-202ENST00000366942 ATP1B4Q9UN42 357 aaPredicted RBP6.31□□□□□ -1.4
USH2A-202ENST00000366942 TRHP20396 242 aaPredicted RBP6.21□□□□□ -1.41
USH2A-202ENST00000366942 BCANQ96GW7 911 aa6.21□□□□□ -1.41
USH2A-202ENST00000366942 FBLN2P98095 1184 aa6.19□□□□□ -1.42
USH2A-202ENST00000366942 TTBK1Q5TCY1 1321 aaPredicted RBP6.17□□□□□ -1.42
USH2A-202ENST00000366942 CHIC1Q5VXU3 224 aa6.15□□□□□ -1.42
USH2A-202ENST00000366942 SUPT5HO00267 1087 aaKnown RBP6.13□□□□□ -1.43
USH2A-202ENST00000366942 NPM2Q86SE8 214 aaKnown RBP6.09□□□□□ -1.43
USH2A-202ENST00000366942 CHMP7Q8WUX9 453 aaPredicted RBP6.09□□□□□ -1.43
USH2A-202ENST00000366942 STAG3Q9UJ98 1225 aa6.09□□□□□ -1.43
USH2A-202ENST00000366942 PELP1Q8IZL8 1130 aaKnown RBP6.07□□□□□ -1.44
USH2A-202ENST00000366942 NEFMP07197 916 aa6.05□□□□□ -1.44
USH2A-202ENST00000366942 PABPN1Q86U42 306 aaKnown RBP eCLIP6.05□□□□□ -1.44
USH2A-202ENST00000366942 HAP1P54257 671 aaPredicted RBP6.05□□□□□ -1.44
USH2A-202ENST00000366942 SLC4A1APQ9BWU0 796 aaKnown RBP6.04□□□□□ -1.44
USH2A-202ENST00000366942 EHMT2Q96KQ7 1210 aa6.04□□□□□ -1.44
USH2A-202ENST00000366942 PLPPR3Q6T4P5 718 aa6.03□□□□□ -1.44
USH2A-202ENST00000366942 TRIM41Q8WV44 630 aa6.03□□□□□ -1.44
USH2A-202ENST00000366942 SCAF1Q9H7N4 1312 aaKnown RBP6.02□□□□□ -1.45
USH2A-202ENST00000366942 ARID4BQ4LE39 1312 aaPredicted RBP6.01□□□□□ -1.45
USH2A-202ENST00000366942 RANGAP1P46060 587 aaPredicted RBP6.01□□□□□ -1.45
USH2A-202ENST00000366942 C14orf37Q86TY3 774 aa6.01□□□□□ -1.45
USH2A-202ENST00000366942 CDK11AQ9UQ88 783 aaPredicted RBP6.01□□□□□ -1.45
USH2A-202ENST00000366942 UBTFP17480 764 aaKnown RBP6□□□□□ -1.45
USH2A-202ENST00000366942 ABCC9O60706 1549 aa6□□□□□ -1.45
USH2A-202ENST00000366942 A0A0G2JS52 829 aa5.96□□□□□ -1.46
USH2A-202ENST00000366942 MYT1Q01538 1121 aa5.96□□□□□ -1.46
USH2A-202ENST00000366942 PHF23Q9BUL5 403 aaPredicted RBP5.96□□□□□ -1.46
USH2A-202ENST00000366942 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.94□□□□□ -1.46
USH2A-202ENST00000366942 SLC24A1O60721 1099 aa5.91□□□□□ -1.46
USH2A-202ENST00000366942 SHROOM4Q9ULL8 1493 aa5.91□□□□□ -1.46
USH2A-202ENST00000366942 HDGFP51858 240 aaKnown RBP5.89□□□□□ -1.47
USH2A-202ENST00000366942 ZBTB47Q9UFB7 747 aaPredicted RBP5.89□□□□□ -1.47
USH2A-202ENST00000366942 ERCC6Q03468 1493 aa5.88□□□□□ -1.47
USH2A-202ENST00000366942 PPP1R15AO75807 674 aaPredicted RBP5.87□□□□□ -1.47
USH2A-202ENST00000366942 SF3B2Q13435 895 aaKnown RBP5.86□□□□□ -1.47
USH2A-202ENST00000366942 TMX4Q9H1E5 349 aaPredicted RBP5.86□□□□□ -1.47
USH2A-202ENST00000366942 NPHP1O15259 732 aa5.85□□□□□ -1.47
USH2A-202ENST00000366942 HMGB2P26583 209 aaKnown RBP5.85□□□□□ -1.47
USH2A-202ENST00000366942 CCER1Q8TC90 406 aaPredicted RBP5.85□□□□□ -1.47
USH2A-202ENST00000366942 EIF4G2P78344 907 aaKnown RBP eCLIP5.83□□□□□ -1.48
USH2A-202ENST00000366942 KRI1Q8N9T8 703 aaKnown RBP5.83□□□□□ -1.48
USH2A-202ENST00000366942 CSRNP3Q8WYN3 585 aa5.81□□□□□ -1.48
USH2A-202ENST00000366942 MEX3CQ5U5Q3 659 aaKnown RBP5.81□□□□□ -1.48
USH2A-202ENST00000366942 CHGAP10645 457 aaKnown RBP5.8□□□□□ -1.48
USH2A-202ENST00000366942 ANO8Q9HCE9 1232 aaPredicted RBP5.8□□□□□ -1.48
USH2A-202ENST00000366942 POLR3GLQ9BT43 218 aa5.77□□□□□ -1.49
USH2A-202ENST00000366942 CCDC9Q9Y3X0 531 aaKnown RBP5.75□□□□□ -1.49
USH2A-202ENST00000366942 GOLGA2Q08379 1002 aa5.75□□□□□ -1.49
USH2A-202ENST00000366942 WASHC2AQ641Q2 1341 aa5.72□□□□□ -1.49
USH2A-202ENST00000366942 OSCARQ8IYS5 282 aa5.72□□□□□ -1.49
USH2A-202ENST00000366942 TRIM52Q96A61 297 aa5.72□□□□□ -1.49
USH2A-202ENST00000366942 TSPY4P0CV99 314 aa5.71□□□□□ -1.49
USH2A-202ENST00000366942 TSPY10P0CW01 314 aa5.71□□□□□ -1.49
USH2A-202ENST00000366942 LMOD2Q6P5Q4 547 aa5.7□□□□□ -1.5
USH2A-202ENST00000366942 ZNF777Q9ULD5 760 aaPredicted RBP5.7□□□□□ -1.5
USH2A-202ENST00000366942 CDK11BP21127 795 aaKnown RBP5.7□□□□□ -1.5
USH2A-202ENST00000366942 DMRT2Q9Y5R5 561 aa5.68□□□□□ -1.5
USH2A-202ENST00000366942 PLEKHD1A6NEE1 506 aa5.67□□□□□ -1.5
USH2A-202ENST00000366942 DAXXQ9UER7 740 aaPredicted RBP5.67□□□□□ -1.5
USH2A-202ENST00000366942 ZBTB7CA1YPR0 619 aa5.67□□□□□ -1.5
USH2A-202ENST00000366942 MAP3K9P80192 1104 aa5.67□□□□□ -1.5
USH2A-202ENST00000366942 WDHD1O75717 1129 aaPredicted RBP5.66□□□□□ -1.5
USH2A-202ENST00000366942 EID1Q9Y6B2 187 aa5.66□□□□□ -1.5
USH2A-202ENST00000366942 FKBP8Q14318 412 aa5.66□□□□□ -1.5
USH2A-202ENST00000366942 SENP3Q9H4L4 574 aaPredicted RBP5.66□□□□□ -1.5
USH2A-202ENST00000366942 PPP1R1BQ9UD71 204 aaPredicted RBP5.66□□□□□ -1.5
USH2A-202ENST00000366942 ZNF710Q8N1W2 664 aa5.65□□□□□ -1.51
USH2A-202ENST00000366942 NEFLP07196 543 aa5.65□□□□□ -1.51
USH2A-202ENST00000366942 KCNH8Q96L42 1107 aa5.65□□□□□ -1.51
USH2A-202ENST00000366942 ACIN1Q9UKV3 1341 aaKnown RBP5.64□□□□□ -1.51
USH2A-202ENST00000366942 ARXQ96QS3 562 aa5.64□□□□□ -1.51
USH2A-202ENST00000366942 ZNF326Q5BKZ1 582 aaKnown RBP5.64□□□□□ -1.51
USH2A-202ENST00000366942 ITGAEP38570 1179 aa5.63□□□□□ -1.51
USH2A-202ENST00000366942 G3V3G9 751 aa5.63□□□□□ -1.51
USH2A-202ENST00000366942 DCAF8Q5TAQ9 597 aa5.63□□□□□ -1.51
USH2A-202ENST00000366942 MLECQ14165 292 aa5.61□□□□□ -1.51
USH2A-202ENST00000366942 FAM50AQ14320 339 aaKnown RBP5.61□□□□□ -1.51
USH2A-202ENST00000366942 KLHL34Q8N239 644 aa5.61□□□□□ -1.51
USH2A-202ENST00000366942 CYB5RLQ6IPT4 315 aa5.6□□□□□ -1.51
USH2A-202ENST00000366942 MSH5O43196 834 aa5.6□□□□□ -1.51
USH2A-202ENST00000366942 CLSPNQ9HAW4 1339 aa5.59□□□□□ -1.51
USH2A-202ENST00000366942 PLEKHG5O94827 1062 aa5.58□□□□□ -1.52
USH2A-202ENST00000366942 ERICH6Q7L0X2 663 aa5.58□□□□□ -1.52
USH2A-202ENST00000366942 CHMP4AQ9BY43 222 aa5.58□□□□□ -1.52
USH2A-202ENST00000366942 CWC22Q9HCG8 908 aaKnown RBP5.58□□□□□ -1.52
USH2A-202ENST00000366942 CSB-PGBD3P0DP91 1061 aa5.57□□□□□ -1.52
USH2A-202ENST00000366942 ARID3CA6NKF2 412 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms