RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W FRS2P15625 503 aaKnown RBP4.91□□□□□ -1.62
SSH4YKL124W TMT1P32643 299 aa4.91□□□□□ -1.62
SSH4YKL124W RAD54P32863 898 aa4.91□□□□□ -1.62
SSH4YKL124W RRP14P36080 434 aaKnown RBP4.91□□□□□ -1.62
SSH4YKL124W UBP14P38237 781 aaKnown RBP4.91□□□□□ -1.62
SSH4YKL124W STB5P38699 743 aa4.91□□□□□ -1.62
SSH4YKL124W SIP3P38717 1229 aa4.91□□□□□ -1.62
SSH4YKL124W OPT1P40897 799 aa4.91□□□□□ -1.62
SSH4YKL124W SAD1P43589 448 aa4.91□□□□□ -1.62
SSH4YKL124W ACF4P47129 309 aa4.91□□□□□ -1.62
SSH4YKL124W PIL1P53252 339 aaKnown RBP4.91□□□□□ -1.62
SSH4YKL124W YNL134CP53912 376 aaKnown RBP4.91□□□□□ -1.62
SSH4YKL124W NCS2P53923 493 aaPredicted RBP4.91□□□□□ -1.62
SSH4YKL124W HEH2Q03281 663 aa4.91□□□□□ -1.62
SSH4YKL124W VPS20Q04272 221 aa4.91□□□□□ -1.62
SSH4YKL124W NOB1Q08444 459 aaKnown RBP4.91□□□□□ -1.62
SSH4YKL124W ERP4Q12450 207 aa4.91□□□□□ -1.62
SSH4YKL124W PTC5Q12511 572 aa4.91□□□□□ -1.62
SSH4YKL124W PCD1Q12524 340 aa4.91□□□□□ -1.62
SSH4YKL124W TUF1P02992 437 aaKnown RBP4.9□□□□□ -1.62
SSH4YKL124W YEL076C-AP0CX16 216 aa4.9□□□□□ -1.62
SSH4YKL124W YLR464WP0CX17 216 aa4.9□□□□□ -1.62
SSH4YKL124W BIO2P32451 375 aa4.9□□□□□ -1.62
SSH4YKL124W COT1P32798 439 aa4.9□□□□□ -1.62
SSH4YKL124W MFT1P33441 392 aaKnown RBP4.9□□□□□ -1.62
SSH4YKL124W ATG19P35193 415 aa4.9□□□□□ -1.62
SSH4YKL124W MRPL7P36519 292 aa4.9□□□□□ -1.62
SSH4YKL124W PTC2P39966 464 aaKnown RBP4.9□□□□□ -1.62
SSH4YKL124W YEL076CP39971 216 aa4.9□□□□□ -1.62
SSH4YKL124W BIM1P40013 344 aa4.9□□□□□ -1.62
SSH4YKL124W RPN3P40016 523 aaKnown RBP4.9□□□□□ -1.62
SSH4YKL124W ESL1P40456 1118 aa4.9□□□□□ -1.62
SSH4YKL124W FAF1P40546 346 aaPredicted RBP4.9□□□□□ -1.62
SSH4YKL124W ENT3P47160 408 aa4.9□□□□□ -1.62
SSH4YKL124W PEX14P53112 341 aa4.9□□□□□ -1.62
SSH4YKL124W CAF130P53280 1122 aaPredicted RBP4.9□□□□□ -1.62
SSH4YKL124W SEC5P89102 971 aa4.9□□□□□ -1.62
SSH4YKL124W EMI2Q04409 500 aaKnown RBP4.9□□□□□ -1.62
SSH4YKL124W YLR455WQ06188 304 aa4.9□□□□□ -1.62
SSH4YKL124W CUR1Q06469 252 aa4.9□□□□□ -1.62
SSH4YKL124W RRP15Q06511 250 aaPredicted RBP4.9□□□□□ -1.62
SSH4YKL124W YOL098CQ12496 1037 aa4.9□□□□□ -1.62
SSH4YKL124W RPC53P25441 422 aa4.89□□□□□ -1.63
SSH4YKL124W URA1P28272 314 aaPredicted RBP4.89□□□□□ -1.63
SSH4YKL124W SYN8P31377 255 aa4.89□□□□□ -1.63
SSH4YKL124W RPT1P33299 467 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W VPS35P34110 944 aa4.89□□□□□ -1.63
SSH4YKL124W PRX1P34227 261 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W MAL33P38157 468 aa4.89□□□□□ -1.63
SSH4YKL124W APN2P38207 520 aa4.89□□□□□ -1.63
SSH4YKL124W UBX7P38349 436 aa4.89□□□□□ -1.63
SSH4YKL124W YHL026CP38740 315 aa4.89□□□□□ -1.63
SSH4YKL124W YHR131CP38835 850 aa4.89□□□□□ -1.63
SSH4YKL124W SNF7P39929 240 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W ISM1P48526 1002 aa4.89□□□□□ -1.63
SSH4YKL124W ALT2P52892 507 aa4.89□□□□□ -1.63
SSH4YKL124W YNL034WP53963 612 aa4.89□□□□□ -1.63
SSH4YKL124W YNL018CP53976 612 aa4.89□□□□□ -1.63
SSH4YKL124W EIS1Q05050 843 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W ECM7Q06200 448 aa4.89□□□□□ -1.63
SSH4YKL124W NOC3Q07896 663 aaPredicted RBP4.89□□□□□ -1.63
SSH4YKL124W IES4Q08561 116 aa4.89□□□□□ -1.63
SSH4YKL124W HIS4P00815 799 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W PFK1P16861 987 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W GLN3P18494 730 aa4.89□□□□□ -1.63
SSH4YKL124W DBP5P20449 482 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W SSD1P24276 1250 aaKnown RBP RIP-Chip data4.89□□□□□ -1.63not detected
SSH4YKL124W PPG1P32838 368 aa4.89□□□□□ -1.63
SSH4YKL124W SKG6P32900 734 aaPredicted RBP4.89□□□□□ -1.63
SSH4YKL124W MRX3P38172 270 aa4.89□□□□□ -1.63
SSH4YKL124W KIC1P38692 1080 aa4.89□□□□□ -1.63
SSH4YKL124W PIH1P38768 344 aa4.89□□□□□ -1.63
SSH4YKL124W FMP10P40098 244 aa4.89□□□□□ -1.63
SSH4YKL124W NPA3P47122 385 aa4.89□□□□□ -1.63
SSH4YKL124W UBA2P52488 636 aa4.89□□□□□ -1.63
SSH4YKL124W CUE3P53137 624 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W MNP1P53163 194 aaPredicted RBP4.89□□□□□ -1.63
SSH4YKL124W CUL3P53202 744 aa4.89□□□□□ -1.63
SSH4YKL124W YGR130CP53278 816 aa4.89□□□□□ -1.63
SSH4YKL124W RTT102P53330 157 aa4.89□□□□□ -1.63
SSH4YKL124W ALG12P53730 551 aa4.89□□□□□ -1.63
SSH4YKL124W BNI4P53858 892 aa4.89□□□□□ -1.63
SSH4YKL124W RPL34AP87262 121 aaPredicted RBP4.89□□□□□ -1.63
SSH4YKL124W DOT1Q04089 582 aaKnown RBP4.89□□□□□ -1.63
SSH4YKL124W ENT2Q05785 613 aa4.89□□□□□ -1.63
SSH4YKL124W ADY4Q05955 493 aa4.89□□□□□ -1.63
SSH4YKL124W CDC73Q06697 393 aa4.89□□□□□ -1.63
SSH4YKL124W OSW2Q12202 724 aa4.89□□□□□ -1.63
SSH4YKL124W NKP1Q12493 238 aa4.89□□□□□ -1.63
SSH4YKL124W HXK1P04806 485 aaKnown RBP4.88□□□□□ -1.63
SSH4YKL124W CIT2P08679 460 aa4.88□□□□□ -1.63
SSH4YKL124W PCK1P10963 549 aa4.88□□□□□ -1.63
SSH4YKL124W ISY1P21374 235 aaPredicted RBP4.88□□□□□ -1.63
SSH4YKL124W URK1P27515 501 aa4.88□□□□□ -1.63
SSH4YKL124W YSC83P32792 385 aa4.88□□□□□ -1.63
SSH4YKL124W BLI1P35727 113 aa4.88□□□□□ -1.63
SSH4YKL124W RFT1P38206 574 aaPredicted RBP4.88□□□□□ -1.63
SSH4YKL124W PPX1P38698 397 aa4.88□□□□□ -1.63
SSH4YKL124W OYE3P41816 400 aaPredicted RBP4.88□□□□□ -1.63
SSH4YKL124W LAM5P43560 674 aa4.88□□□□□ -1.63
Retrieved 100 of 5,963 RNA–protein pairs in 21.1 ms