RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ARHGAP29Q52LW3 1261 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 UBXN4Q92575 508 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 EIF3CQ99613 913 aaKnown RBP8.05□□□□□ -1.12
SCN1A-213ENST00000636759 ERCC6LQ2NKX8 1250 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 EXOC4Q96A65 974 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 TERF2IPQ9NYB0 399 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 STAG3Q9UJ98 1225 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 ATP10DQ9P241 1426 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 EDC4Q6P2E9 1401 aaKnown RBP8.04□□□□□ -1.12
SCN1A-213ENST00000636759 PTPRUQ92729 1446 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 GADD45BO75293 160 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-213ENST00000636759 SAFB2Q14151 953 aaKnown RBP eCLIP8.04□□□□□ -1.12
SCN1A-213ENST00000636759 ATF7IPQ6VMQ6 1270 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 WAPLQ7Z5K2 1190 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 USP48Q86UV5 1035 aa8.04□□□□□ -1.12
SCN1A-213ENST00000636759 H2AFXP16104 143 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-213ENST00000636759 ZNF526Q8TF50 670 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-213ENST00000636759 ABCC4O15439 1325 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 SMC2O95347 1197 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 BRD1O95696 1058 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 ZSCAN25Q6NSZ9 544 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 NBPF11Q86T75 865 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 TMEM57Q8N5G2 664 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 CCDC189A1A4V9 331 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 WASLO00401 505 aaPredicted RBP8.03□□□□□ -1.12
SCN1A-213ENST00000636759 CASTP20810 708 aaKnown RBP8.03□□□□□ -1.12
SCN1A-213ENST00000636759 HDGFP51858 240 aaKnown RBP8.03□□□□□ -1.12
SCN1A-213ENST00000636759 GIMAP6Q6P9H5 292 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 MRVI1Q9Y6F6 885 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 ROBO2Q9HCK4 1378 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 TTC36A6NLP5 189 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 ATP8B1O43520 1251 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 SMC1AQ14683 1233 aaKnown RBP8.03□□□□□ -1.12
SCN1A-213ENST00000636759 NBPF6Q5VWK0 638 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 NBPF5PQ86XG9 351 aaPredicted RBP8.03□□□□□ -1.12
SCN1A-213ENST00000636759 MICALL1Q8N3F8 863 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 NBPF4Q96M43 638 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 CABP1Q9NZU7 370 aa8.03□□□□□ -1.12
SCN1A-213ENST00000636759 NOB1Q9ULX3 412 aaKnown RBP8.03□□□□□ -1.12
SCN1A-213ENST00000636759 ADAMTSL3P82987 1691 aa8.02□□□□□ -1.12
SCN1A-213ENST00000636759 ZBTB7BO15156 539 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 ARID4AP29374 1257 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 ALDH1L2Q3SY69 923 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 NEMFO60524 1076 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 JMYQ8N9B5 988 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 IQUBQ8NA54 791 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 FAM200AQ8TCP9 573 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 ZCCHC17Q9NP64 241 aaKnown RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 WDR33Q9C0J8 1336 aaKnown RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 CACNA1FO60840 1977 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 AATKQ6ZMQ8 1374 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 RGPD8O14715 1765 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 SMARCA5O60264 1052 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 LTKP29376 864 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 MCM2P49736 904 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 INTS3Q68E01 1043 aaKnown RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 EFCAB13Q8IY85 973 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 PDRG1Q9NUG6 133 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 TRMT1Q9NXH9 659 aaKnown RBP8.02□□□□□ -1.13
SCN1A-213ENST00000636759 PSD3Q9NYI0 1048 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 EXOC6BQ9Y2D4 811 aa8.02□□□□□ -1.13
SCN1A-213ENST00000636759 ELP1O95163 1332 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 UBE2HP62256 183 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 TSGA10IPQ3SY00 556 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 GBP6Q6ZN66 633 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 FAM107BQ9H098 131 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 CEP170BQ9Y4F5 1589 aaPredicted RBP8.01□□□□□ -1.13
SCN1A-213ENST00000636759 NBPF10Q6P3W6 841 aaKnown RBP8.01□□□□□ -1.13
SCN1A-213ENST00000636759 HDGFL2Q7Z4V5 671 aaPredicted RBP8.01□□□□□ -1.13
SCN1A-213ENST00000636759 MRPL50Q8N5N7 158 aaKnown RBP8.01□□□□□ -1.13
SCN1A-213ENST00000636759 CFAP53Q96M91 514 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 CLIP2Q9UDT6 1046 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 MKRN1Q9UHC7 482 aaKnown RBP8.01□□□□□ -1.13
SCN1A-213ENST00000636759 ADAM21Q9UKJ8 722 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 CHD2O14647 1828 aaKnown RBP8.01□□□□□ -1.13
SCN1A-213ENST00000636759 NEBLO76041 1014 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 CORO7P57737 925 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 GORABQ5T7V8 394 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 CCDC34Q96HJ3 373 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 GGNBP2Q9H3C7 697 aa8.01□□□□□ -1.13
SCN1A-213ENST00000636759 ESF1Q9H501 851 aaKnown RBP8.01□□□□□ -1.13
SCN1A-213ENST00000636759 SSH2Q76I76 1423 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 NRDCO43847 1150 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 RDXP35241 583 aaKnown RBP8□□□□□ -1.13
SCN1A-213ENST00000636759 NEK4P51957 841 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 ZKSCAN8Q15776 578 aaPredicted RBP8□□□□□ -1.13
SCN1A-213ENST00000636759 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8□□□□□ -1.13
SCN1A-213ENST00000636759 AP5Z1O43299 807 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 VAMP4O75379 141 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 NOL8Q76FK4 1167 aaKnown RBP8□□□□□ -1.13
SCN1A-213ENST00000636759 TADA2BQ86TJ2 420 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 GCC1Q96CN9 775 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 TMX3Q96JJ7 454 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 USP26Q9BXU7 913 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 BSDC1Q9NW68 430 aaPredicted RBP8□□□□□ -1.13
SCN1A-213ENST00000636759 ATP6V1DQ9Y5K8 247 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 KIF24Q5T7B8 1368 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 NWD1Q149M9 1564 aa8□□□□□ -1.13
SCN1A-213ENST00000636759 A0A087WUV0 522 aaPredicted RBP7.99□□□□□ -1.13
SCN1A-213ENST00000636759 U2AF1L5P0DN76 240 aaPredicted RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms