RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ANKRD36CQ5JPF3 1778 aa24.87■■□□□ 1.57
CDX1-202ENST00000616154 TMPOP42166 694 aaKnown RBP24.86■■□□□ 1.57
CDX1-202ENST00000616154 CC2D2BQ6DHV5 1058 aa24.86■■□□□ 1.57
CDX1-202ENST00000616154 RPGRQ92834 1020 aaKnown RBP24.86■■□□□ 1.57
CDX1-202ENST00000616154 NTSR2O95665 410 aa24.86■■□□□ 1.57
CDX1-202ENST00000616154 PDIA6Q15084 440 aa24.86■■□□□ 1.57
CDX1-202ENST00000616154 TAF1DQ9H5J8 278 aaPredicted RBP24.86■■□□□ 1.57
CDX1-202ENST00000616154 FZD9O00144 591 aa24.85■■□□□ 1.57
CDX1-202ENST00000616154 PARP10Q53GL7 1025 aa24.85■■□□□ 1.57
CDX1-202ENST00000616154 LDHDQ86WU2 507 aa24.85■■□□□ 1.57
CDX1-202ENST00000616154 ADAMTSL1Q8N6G6 1762 aa24.84■■□□□ 1.57
CDX1-202ENST00000616154 PPP1R42Q7Z4L9 355 aa24.84■■□□□ 1.57
CDX1-202ENST00000616154 CREBZFQ9NS37 354 aa24.84■■□□□ 1.57
CDX1-202ENST00000616154 EIF2S2P20042 333 aaKnown RBP24.83■■□□□ 1.56
CDX1-202ENST00000616154 GRIPAP1Q4V328 841 aa24.83■■□□□ 1.56
CDX1-202ENST00000616154 RBM17Q96I25 401 aaKnown RBP24.83■■□□□ 1.56
CDX1-202ENST00000616154 CRAMP1Q96RY5 1269 aa24.83■■□□□ 1.56
CDX1-202ENST00000616154 PROSER3Q2NL68 480 aa24.82■■□□□ 1.56
CDX1-202ENST00000616154 HACL1Q9UJ83 578 aa24.82■■□□□ 1.56
CDX1-202ENST00000616154 COL4A5P29400 1685 aa24.81■■□□□ 1.56
CDX1-202ENST00000616154 PASKQ96RG2 1323 aa24.81■■□□□ 1.56
CDX1-202ENST00000616154 LAMB2P55268 1798 aa24.8■■□□□ 1.56
CDX1-202ENST00000616154 C3orf67Q6ZVT6 689 aa24.8■■□□□ 1.56
CDX1-202ENST00000616154 GPC2Q8N158 579 aa24.8■■□□□ 1.56
CDX1-202ENST00000616154 JDP2Q8WYK2 163 aa24.8■■□□□ 1.56
CDX1-202ENST00000616154 PPEF1O14829 653 aaPredicted RBP24.79■■□□□ 1.56
CDX1-202ENST00000616154 ANXA1P04083 346 aa24.79■■□□□ 1.56
CDX1-202ENST00000616154 SLC10A5Q5PT55 438 aa24.79■■□□□ 1.56
CDX1-202ENST00000616154 COL13A1Q5TAT6 717 aaPredicted RBP24.79■■□□□ 1.56
CDX1-202ENST00000616154 UTP14AQ9BVJ6 771 aaKnown RBP24.79■■□□□ 1.56
CDX1-202ENST00000616154 RNF123Q5XPI4 1314 aa24.79■■□□□ 1.56
CDX1-202ENST00000616154 EPHX2P34913 555 aa24.78■■□□□ 1.56
CDX1-202ENST00000616154 CCDC146Q8IYE0 955 aa24.78■■□□□ 1.56
CDX1-202ENST00000616154 NLRP3Q96P20 1036 aa24.78■■□□□ 1.56
CDX1-202ENST00000616154 CHL1O00533 1208 aa24.77■■□□□ 1.56
CDX1-202ENST00000616154 HSPA1AP0DMV8 641 aaKnown RBP24.77■■□□□ 1.56
CDX1-202ENST00000616154 HSPA1BP0DMV9 641 aaKnown RBP24.77■■□□□ 1.56
CDX1-202ENST00000616154 EAPPQ56P03 285 aaPredicted RBP24.77■■□□□ 1.56
CDX1-202ENST00000616154 HSP90AB3PQ58FF7 597 aa24.77■■□□□ 1.56
CDX1-202ENST00000616154 COPS6Q7L5N1 327 aa24.76■■□□□ 1.55
CDX1-202ENST00000616154 PNMA8AQ86V59 439 aaPredicted RBP24.76■■□□□ 1.55
CDX1-202ENST00000616154 RUNDC1Q96C34 613 aa24.76■■□□□ 1.55
CDX1-202ENST00000616154 ITGBL1O95965 494 aaPredicted RBP24.75■■□□□ 1.55
CDX1-202ENST00000616154 EIF6P56537 245 aaKnown RBP24.75■■□□□ 1.55
CDX1-202ENST00000616154 NEUROD2Q15784 382 aa24.75■■□□□ 1.55
CDX1-202ENST00000616154 SLC51AQ86UW1 340 aa24.75■■□□□ 1.55
CDX1-202ENST00000616154 XAGE3Q8WTP9 111 aa24.75■■□□□ 1.55
CDX1-202ENST00000616154 TRIM35Q9UPQ4 493 aa24.75■■□□□ 1.55
CDX1-202ENST00000616154 LTBP1Q14766 1721 aa24.74■■□□□ 1.55
CDX1-202ENST00000616154 WDR43Q15061 677 aaKnown RBP eCLIP24.74■■□□□ 1.55
CDX1-202ENST00000616154 LARGE2Q8N3Y3 721 aa24.74■■□□□ 1.55
CDX1-202ENST00000616154 NECTIN2Q92692 538 aa24.74■■□□□ 1.55
CDX1-202ENST00000616154 DDX21Q9NR30 783 aaKnown RBP eCLIP24.74■■□□□ 1.55
CDX1-202ENST00000616154 MKRN1Q9UHC7 482 aaKnown RBP24.74■■□□□ 1.55
CDX1-202ENST00000616154 ADAMTS8Q9UP79 889 aa24.74■■□□□ 1.55
CDX1-202ENST00000616154 CLEC11AQ9Y240 323 aa24.74■■□□□ 1.55
CDX1-202ENST00000616154 CNTNAP1P78357 1384 aa24.73■■□□□ 1.55
CDX1-202ENST00000616154 NLRP10Q86W26 655 aa24.73■■□□□ 1.55
CDX1-202ENST00000616154 ATP6V0A2Q9Y487 856 aa24.73■■□□□ 1.55
CDX1-202ENST00000616154 ABCC4O15439 1325 aa24.72■■□□□ 1.55
CDX1-202ENST00000616154 TCERG1O14776 1098 aaKnown RBP24.72■■□□□ 1.55
CDX1-202ENST00000616154 AIMP1Q12904 312 aaKnown RBP24.72■■□□□ 1.55
CDX1-202ENST00000616154 KRT24Q2M2I5 525 aa24.72■■□□□ 1.55
CDX1-202ENST00000616154 TCIRG1Q13488 830 aa24.71■■□□□ 1.55
CDX1-202ENST00000616154 TMX4Q9H1E5 349 aaPredicted RBP24.71■■□□□ 1.55
CDX1-202ENST00000616154 GJA3Q9Y6H8 435 aa24.71■■□□□ 1.55
CDX1-202ENST00000616154 TMEM88BA6NKF7 163 aa24.7■■□□□ 1.54
CDX1-202ENST00000616154 HOXB7P09629 217 aa24.7■■□□□ 1.54
CDX1-202ENST00000616154 VPS33BQ9H267 617 aa24.7■■□□□ 1.54
CDX1-202ENST00000616154 LAS1LQ9Y4W2 734 aaKnown RBP24.7■■□□□ 1.54
CDX1-202ENST00000616154 NIM1KQ8IY84 436 aa24.69■■□□□ 1.54
CDX1-202ENST00000616154 CHPF2Q9P2E5 772 aa24.69■■□□□ 1.54
CDX1-202ENST00000616154 DDX60Q8IY21 1712 aaKnown RBP24.69■■□□□ 1.54
CDX1-202ENST00000616154 SH3TC1Q8TE82 1336 aa24.69■■□□□ 1.54
CDX1-202ENST00000616154 PPIP5K2O43314 1243 aa24.68■■□□□ 1.54
CDX1-202ENST00000616154 BBOX1O75936 387 aa24.68■■□□□ 1.54
CDX1-202ENST00000616154 LMOD1P29536 600 aaPredicted RBP24.68■■□□□ 1.54
CDX1-202ENST00000616154 MAP1SQ66K74 1059 aaPredicted RBP24.68■■□□□ 1.54
CDX1-202ENST00000616154 CNTROBQ8N137 903 aa24.68■■□□□ 1.54
CDX1-202ENST00000616154 TRMT112Q9UI30 125 aaKnown RBP24.68■■□□□ 1.54
CDX1-202ENST00000616154 TAF1P21675 1872 aa24.68■■□□□ 1.54
CDX1-202ENST00000616154 HCLS1P14317 486 aaPredicted RBP24.67■■□□□ 1.54
CDX1-202ENST00000616154 SCNN1DP51172 638 aa24.67■■□□□ 1.54
CDX1-202ENST00000616154 HDGFL1Q5TGJ6 251 aa24.67■■□□□ 1.54
CDX1-202ENST00000616154 TNS4Q8IZW8 715 aa24.67■■□□□ 1.54
CDX1-202ENST00000616154 RTFDC1Q9BY42 306 aaPredicted RBP24.67■■□□□ 1.54
CDX1-202ENST00000616154 AOC3Q16853 763 aa24.66■■□□□ 1.54
CDX1-202ENST00000616154 SP8Q8IXZ3 490 aa24.66■■□□□ 1.54
CDX1-202ENST00000616154 SUPT20HQ8NEM7 779 aa24.66■■□□□ 1.54
CDX1-202ENST00000616154 DDX46Q7L014 1031 aaKnown RBP24.65■■□□□ 1.54
CDX1-202ENST00000616154 PLBD2Q8NHP8 589 aa24.65■■□□□ 1.54
CDX1-202ENST00000616154 CFAP44Q96MT7 982 aa24.65■■□□□ 1.54
CDX1-202ENST00000616154 LRRC37AA6NMS7 1700 aa24.65■■□□□ 1.54
CDX1-202ENST00000616154 DBF4Q9UBU7 674 aaPredicted RBP24.64■■□□□ 1.54
CDX1-202ENST00000616154 EPS15P42566 896 aa24.63■■□□□ 1.53
CDX1-202ENST00000616154 GRAPQ13588 217 aa24.63■■□□□ 1.53
CDX1-202ENST00000616154 DPP8Q6V1X1 898 aaPredicted RBP24.63■■□□□ 1.53
CDX1-202ENST00000616154 GRAPLQ8TC17 118 aaPredicted RBP24.63■■□□□ 1.53
CDX1-202ENST00000616154 TRPM7Q96QT4 1865 aa24.63■■□□□ 1.53
CDX1-202ENST00000616154 VEGFBP49765 207 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 154.7 ms