RNA–Protein interactions for RNA: ENST00000589882.1

TREM1-206, Transcript of triggering receptor expressed on myeloid cells 1, human

Gene TREM1, Length 1,876 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TREM1-206	ENST00000589882	ABCA9	Q8IUA7	1624 aa		13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	NPHP3	Q7Z494	1330 aa		13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	SAMD9L	Q8IVG5	1584 aa		13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	KIF3C	O14782	793 aa		13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	EIF3J	O75822	258 aa	Known RBP	13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	SMC2	O95347	1197 aa		13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	PDE1A	P54750	535 aa		13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	DNAAF4	Q8WXU2	420 aa		13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	UPF3B	Q9BZI7	483 aa	Known RBP	13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	ZCCHC17	Q9NP64	241 aa	Known RBP	13.78	□□□□□ -0.2
TREM1-206	ENST00000589882	PPP1R12A	O14974	1030 aa	Predicted RBP	13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	SASH3	O75995	380 aa		13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	SEC31A	O94979	1220 aa	Known RBP	13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	ETF1	P62495	437 aa	Known RBP	13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	E2F4	Q16254	413 aa		13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	CAMK4	Q16566	473 aa		13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	TADA2B	Q86TJ2	420 aa		13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	ERC1	Q8IUD2	1116 aa		13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	CKAP2L	Q8IYA6	745 aa		13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	ATP10B	O94823	1461 aa		13.77	□□□□□ -0.21
TREM1-206	ENST00000589882	ARAP3	Q8WWN8	1544 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	HSPA4	P34932	840 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	LRCH2	Q5VUJ6	765 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	CEP85	Q6P2H3	762 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	DNAJC25	Q9H1X3	360 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	DACT1	Q9NYF0	836 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	COL3A1	P02461	1466 aa	Predicted RBP	13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	ARHGEF40	Q8TER5	1519 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	LIG1	P18858	919 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	EVC	P57679	992 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	BRD3	Q15059	726 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	STX1A	Q16623	288 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	HOMER1	Q86YM7	354 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	LRRN4CL	Q8ND94	238 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	CCDC34	Q96HJ3	373 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	FUT8	Q9BYC5	575 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	ADGRL3	Q9HAR2	1447 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	HECW2	Q9P2P5	1572 aa		13.76	□□□□□ -0.21
TREM1-206	ENST00000589882	TTC21A	Q8NDW8	1320 aa		13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	GOLIM4	O00461	696 aa		13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	CTAGE5	O15320	804 aa		13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	CHML	P26374	656 aa		13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	SET	Q01105	290 aa	Predicted RBP	13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	ARID5B	Q14865	1188 aa		13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	IQCB1	Q15051	598 aa		13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	E4F1	Q66K89	784 aa	Predicted RBP	13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	PUS7	Q96PZ0	661 aa	Known RBP	13.75	□□□□□ -0.21
TREM1-206	ENST00000589882	PREX2	Q70Z35	1606 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	BECN2	A8MW95	431 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	SRGAP3	O43295	1099 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	PDC	P20941	246 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	GNAI1	P63096	354 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	STAG1	Q8WVM7	1258 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	RABGGTA	Q92696	567 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	UTP14A	Q9BVJ6	771 aa	Known RBP	13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	ZC3H13	Q5T200	1668 aa	Known RBP	13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	CCDC151	A5D8V7	595 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	SGSM2	O43147	1006 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	NBPF11	Q86T75	865 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	TTC6	Q86TZ1	520 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	TTC14	Q96N46	770 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	PDRG1	Q9NUG6	133 aa		13.74	□□□□□ -0.21
TREM1-206	ENST00000589882	POTEB2	H3BUK9	544 aa		13.73	□□□□□ -0.21
TREM1-206	ENST00000589882	PPFIA4	O75335	1185 aa		13.73	□□□□□ -0.21
TREM1-206	ENST00000589882	GJB2	P29033	226 aa		13.73	□□□□□ -0.21
TREM1-206	ENST00000589882	MAP2K1	Q02750	393 aa	Predicted RBP	13.73	□□□□□ -0.21
TREM1-206	ENST00000589882	DNAJC21	Q5F1R6	531 aa	Known RBP	13.73	□□□□□ -0.21
TREM1-206	ENST00000589882	GORAB	Q5T7V8	394 aa		13.73	□□□□□ -0.21
TREM1-206	ENST00000589882	USP16	Q9Y5T5	823 aa		13.73	□□□□□ -0.21
TREM1-206	ENST00000589882	CCDC189	A1A4V9	331 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	VPS37C	A5D8V6	355 aa	Predicted RBP	13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	MAP2K7	O14733	419 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	SFPQ	P23246	707 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	HAP1	P54257	671 aa	Predicted RBP	13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	TBC1D22A	Q8WUA7	517 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	MPHOSPH8	Q99549	860 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	A1CF	Q9NQ94	594 aa	Known RBP	13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	VPS18	Q9P253	973 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	MSH6	P52701	1360 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	AK2	P54819	239 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	TUBB4B	P68371	445 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	LONRF2	Q1L5Z9	754 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	HDX	Q7Z353	690 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	CARD6	Q9BX69	1037 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	NAT10	Q9H0A0	1025 aa	Known RBP	13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	ACBD3	Q9H3P7	528 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	AOX1	Q06278	1338 aa		13.72	□□□□□ -0.21
TREM1-206	ENST00000589882	SETBP1	Q9Y6X0	1596 aa		13.71	□□□□□ -0.21
TREM1-206	ENST00000589882		H3BQF6	201 aa		13.71	□□□□□ -0.21
TREM1-206	ENST00000589882	URI1	O94763	535 aa	Predicted RBP	13.71	□□□□□ -0.21
TREM1-206	ENST00000589882	MNAT1	P51948	309 aa		13.71	□□□□□ -0.21
TREM1-206	ENST00000589882	PSME1	Q06323	249 aa		13.71	□□□□□ -0.21
TREM1-206	ENST00000589882	APOBR	Q0VD83	1088 aa		13.71	□□□□□ -0.21
TREM1-206	ENST00000589882	TTLL5	Q6EMB2	1281 aa		13.71	□□□□□ -0.21
TREM1-206	ENST00000589882	RUFY3	Q7L099	469 aa		13.71	□□□□□ -0.21
TREM1-206	ENST00000589882	FCHSD1	Q86WN1	690 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms