RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RPGRQ92834 1020 aaKnown RBP27.75■■■□□ 2.03
VPS53-216ENST00000574029 NTSR2O95665 410 aa27.74■■■□□ 2.03
VPS53-216ENST00000574029 RIPK4P57078 832 aa27.74■■■□□ 2.03
VPS53-216ENST00000574029 RALBP1Q15311 655 aa27.74■■■□□ 2.03
VPS53-216ENST00000574029 BABAM1Q9NWV8 329 aa27.74■■■□□ 2.03
VPS53-216ENST00000574029 HACL1Q9UJ83 578 aa27.74■■■□□ 2.03
VPS53-216ENST00000574029 PDIA6Q15084 440 aa27.73■■■□□ 2.03
VPS53-216ENST00000574029 PCNTO95613 3336 aa27.72■■■□□ 2.03
VPS53-216ENST00000574029 GRIPAP1Q4V328 841 aa27.72■■■□□ 2.03
VPS53-216ENST00000574029 GPC2Q8N158 579 aa27.72■■■□□ 2.03
VPS53-216ENST00000574029 CRAMP1Q96RY5 1269 aa27.72■■■□□ 2.03
VPS53-216ENST00000574029 ITGBL1O95965 494 aaPredicted RBP27.71■■■□□ 2.03
VPS53-216ENST00000574029 EPHX2P34913 555 aa27.71■■■□□ 2.03
VPS53-216ENST00000574029 PARP10Q53GL7 1025 aa27.71■■■□□ 2.03
VPS53-216ENST00000574029 PPP1R42Q7Z4L9 355 aa27.71■■■□□ 2.03
VPS53-216ENST00000574029 JDP2Q8WYK2 163 aa27.71■■■□□ 2.03
VPS53-216ENST00000574029 MKRN1Q9UHC7 482 aaKnown RBP27.71■■■□□ 2.03
VPS53-216ENST00000574029 COL4A5P29400 1685 aa27.71■■■□□ 2.03
VPS53-216ENST00000574029 EAPPQ56P03 285 aaPredicted RBP27.7■■■□□ 2.02
VPS53-216ENST00000574029 RBM17Q96I25 401 aaKnown RBP27.7■■■□□ 2.02
VPS53-216ENST00000574029 RNF123Q5XPI4 1314 aa27.69■■■□□ 2.02
VPS53-216ENST00000574029 EIF2S2P20042 333 aaKnown RBP27.69■■■□□ 2.02
VPS53-216ENST00000574029 TMPOP42166 694 aaKnown RBP27.69■■■□□ 2.02
VPS53-216ENST00000574029 C3orf67Q6ZVT6 689 aa27.69■■■□□ 2.02
VPS53-216ENST00000574029 PNMA8AQ86V59 439 aaPredicted RBP27.69■■■□□ 2.02
VPS53-216ENST00000574029 ANKRD36CQ5JPF3 1778 aa27.68■■■□□ 2.02
VPS53-216ENST00000574029 LMOD3Q0VAK6 560 aa27.68■■■□□ 2.02
VPS53-216ENST00000574029 TNS4Q8IZW8 715 aa27.68■■■□□ 2.02
VPS53-216ENST00000574029 CNTNAP1P78357 1384 aa27.68■■■□□ 2.02
VPS53-216ENST00000574029 PPEF1O14829 653 aaPredicted RBP27.67■■■□□ 2.02
VPS53-216ENST00000574029 PROSER3Q2NL68 480 aa27.67■■■□□ 2.02
VPS53-216ENST00000574029 SLC10A5Q5PT55 438 aa27.67■■■□□ 2.02
VPS53-216ENST00000574029 CLEC11AQ9Y240 323 aa27.67■■■□□ 2.02
VPS53-216ENST00000574029 EIF6P56537 245 aaKnown RBP27.66■■■□□ 2.02
VPS53-216ENST00000574029 NLRP3Q96P20 1036 aa27.66■■■□□ 2.02
VPS53-216ENST00000574029 TMEM88BA6NKF7 163 aa27.65■■■□□ 2.02
VPS53-216ENST00000574029 ANXA1P04083 346 aa27.65■■■□□ 2.02
VPS53-216ENST00000574029 SLC51AQ86UW1 340 aa27.65■■■□□ 2.02
VPS53-216ENST00000574029 UTP14AQ9BVJ6 771 aaKnown RBP27.65■■■□□ 2.02
VPS53-216ENST00000574029 LTBP1Q14766 1721 aa27.64■■■□□ 2.02
VPS53-216ENST00000574029 LAMB2P55268 1798 aa27.63■■■□□ 2.01
VPS53-216ENST00000574029 LARGE2Q8N3Y3 721 aa27.63■■■□□ 2.01
VPS53-216ENST00000574029 TCERG1O14776 1098 aaKnown RBP27.62■■■□□ 2.01
VPS53-216ENST00000574029 COPS6Q7L5N1 327 aa27.62■■■□□ 2.01
VPS53-216ENST00000574029 CNTROBQ8N137 903 aa27.62■■■□□ 2.01
VPS53-216ENST00000574029 GJA3Q9Y6H8 435 aa27.62■■■□□ 2.01
VPS53-216ENST00000574029 HSP90AB3PQ58FF7 597 aa27.61■■■□□ 2.01
VPS53-216ENST00000574029 MAP1SQ66K74 1059 aaPredicted RBP27.61■■■□□ 2.01
VPS53-216ENST00000574029 ATP6V0A2Q9Y487 856 aa27.61■■■□□ 2.01
VPS53-216ENST00000574029 MYBBP1AQ9BQG0 1328 aaKnown RBP27.61■■■□□ 2.01
VPS53-216ENST00000574029 ABCC4O15439 1325 aa27.6■■■□□ 2.01
VPS53-216ENST00000574029 CHL1O00533 1208 aa27.59■■■□□ 2.01
VPS53-216ENST00000574029 SCNN1DP51172 638 aa27.59■■■□□ 2.01
VPS53-216ENST00000574029 NLRP10Q86W26 655 aa27.59■■■□□ 2.01
VPS53-216ENST00000574029 XAGE3Q8WTP9 111 aa27.59■■■□□ 2.01
VPS53-216ENST00000574029 NECTIN2Q92692 538 aa27.59■■■□□ 2.01
VPS53-216ENST00000574029 VPS33BQ9H267 617 aa27.59■■■□□ 2.01
VPS53-216ENST00000574029 LMOD1P29536 600 aaPredicted RBP27.58■■■□□ 2.01
VPS53-216ENST00000574029 AIMP1Q12904 312 aaKnown RBP27.58■■■□□ 2.01
VPS53-216ENST00000574029 NIM1KQ8IY84 436 aa27.58■■■□□ 2.01
VPS53-216ENST00000574029 CCDC146Q8IYE0 955 aa27.58■■■□□ 2.01
VPS53-216ENST00000574029 TMX4Q9H1E5 349 aaPredicted RBP27.58■■■□□ 2.01
VPS53-216ENST00000574029 DDX21Q9NR30 783 aaKnown RBP eCLIP27.58■■■□□ 2.01
VPS53-216ENST00000574029 VEGFBP49765 207 aa27.57■■■□□ 2
VPS53-216ENST00000574029 TCIRG1Q13488 830 aa27.57■■■□□ 2
VPS53-216ENST00000574029 NEUROD2Q15784 382 aa27.57■■■□□ 2
VPS53-216ENST00000574029 TRIM35Q9UPQ4 493 aa27.57■■■□□ 2
VPS53-216ENST00000574029 PPIP5K2O43314 1243 aa27.56■■■□□ 2
VPS53-216ENST00000574029 EPS15P42566 896 aa27.56■■■□□ 2
VPS53-216ENST00000574029 DDX10Q13206 875 aaKnown RBP27.56■■■□□ 2
VPS53-216ENST00000574029 KRT24Q2M2I5 525 aa27.56■■■□□ 2
VPS53-216ENST00000574029 RUNDC1Q96C34 613 aa27.56■■■□□ 2
VPS53-216ENST00000574029 RTFDC1Q9BY42 306 aaPredicted RBP27.56■■■□□ 2
VPS53-216ENST00000574029 CAPN15O75808 1086 aa27.55■■■□□ 2
VPS53-216ENST00000574029 BBOX1O75936 387 aa27.55■■■□□ 2
VPS53-216ENST00000574029 AOC3Q16853 763 aa27.55■■■□□ 2
VPS53-216ENST00000574029 RASSF10A6NK89 507 aa27.54■■■□□ 2
VPS53-216ENST00000574029 FOXN1O15353 648 aa27.54■■■□□ 2
VPS53-216ENST00000574029 HCLS1P14317 486 aaPredicted RBP27.54■■■□□ 2
VPS53-216ENST00000574029 SP8Q8IXZ3 490 aa27.54■■■□□ 2
VPS53-216ENST00000574029 SUPT20HQ8NEM7 779 aa27.54■■■□□ 2
VPS53-216ENST00000574029 USP50Q70EL3 339 aaPredicted RBP27.53■■■□□ 2
VPS53-216ENST00000574029 TRMT112Q9UI30 125 aaKnown RBP27.53■■■□□ 2
VPS53-216ENST00000574029 SH3TC1Q8TE82 1336 aa27.52■■■□□ 2
VPS53-216ENST00000574029 DEFB115Q30KQ5 88 aa27.52■■■□□ 2
VPS53-216ENST00000574029 CHPF2Q9P2E5 772 aa27.52■■■□□ 2
VPS53-216ENST00000574029 LAS1LQ9Y4W2 734 aaKnown RBP27.52■■■□□ 2
VPS53-216ENST00000574029 WDR43Q15061 677 aaKnown RBP eCLIP27.51■■□□□ 1.99
VPS53-216ENST00000574029 ZNRF3Q9ULT6 936 aa27.51■■□□□ 1.99
VPS53-216ENST00000574029 DDX60Q8IY21 1712 aaKnown RBP27.5■■□□□ 1.99
VPS53-216ENST00000574029 HOXB7P09629 217 aa27.5■■□□□ 1.99
VPS53-216ENST00000574029 DPP8Q6V1X1 898 aaPredicted RBP27.5■■□□□ 1.99
VPS53-216ENST00000574029 DDX46Q7L014 1031 aaKnown RBP27.5■■□□□ 1.99
VPS53-216ENST00000574029 MPNDQ8N594 471 aa27.5■■□□□ 1.99
VPS53-216ENST00000574029 TAF1P21675 1872 aa27.5■■□□□ 1.99
VPS53-216ENST00000574029 CXCL9Q07325 125 aa27.49■■□□□ 1.99
VPS53-216ENST00000574029 GRAPQ13588 217 aa27.49■■□□□ 1.99
VPS53-216ENST00000574029 HDGFL1Q5TGJ6 251 aa27.49■■□□□ 1.99
VPS53-216ENST00000574029 PLBD2Q8NHP8 589 aa27.49■■□□□ 1.99
VPS53-216ENST00000574029 GRAPLQ8TC17 118 aaPredicted RBP27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms