RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 NEFMP07197 916 aa18.34■□□□□ 0.53
LDLR-213ENST00000560502 GTF2E1P29083 439 aaPredicted RBP18.34■□□□□ 0.53
LDLR-213ENST00000560502 HOXA10P31260 410 aaPredicted RBP18.34■□□□□ 0.53
LDLR-213ENST00000560502 SYNE4Q8N205 404 aa18.34■□□□□ 0.53
LDLR-213ENST00000560502 NGEFQ8N5V2 710 aa18.34■□□□□ 0.53
LDLR-213ENST00000560502 MKRN1Q9UHC7 482 aaKnown RBP18.34■□□□□ 0.53
LDLR-213ENST00000560502 LTBP1Q14766 1721 aa18.34■□□□□ 0.53
LDLR-213ENST00000560502 ANKRD36CQ5JPF3 1778 aa18.33■□□□□ 0.53
LDLR-213ENST00000560502 ERBB4Q15303 1308 aa18.33■□□□□ 0.53
LDLR-213ENST00000560502 KIF6Q6ZMV9 814 aa18.33■□□□□ 0.52
LDLR-213ENST00000560502 HACL1Q9UJ83 578 aa18.33■□□□□ 0.52
LDLR-213ENST00000560502 RRP7AQ9Y3A4 280 aaKnown RBP18.33■□□□□ 0.52
LDLR-213ENST00000560502 EPHX2P34913 555 aa18.32■□□□□ 0.52
LDLR-213ENST00000560502 CC2D2BQ6DHV5 1058 aa18.32■□□□□ 0.52
LDLR-213ENST00000560502 ZNF34Q8IZ26 560 aa18.32■□□□□ 0.52
LDLR-213ENST00000560502 RNF123Q5XPI4 1314 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 NTSR2O95665 410 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 MYL6BP14649 208 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 GPTP24298 496 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 SUSD4Q5VX71 490 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 LRP10Q7Z4F1 713 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 GPC2Q8N158 579 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 ZBTB3Q9H5J0 574 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 LAMB2P55268 1798 aa18.31■□□□□ 0.52
LDLR-213ENST00000560502 EAPPQ56P03 285 aaPredicted RBP18.3■□□□□ 0.52
LDLR-213ENST00000560502 GIGYF2Q6Y7W6 1299 aaKnown RBP18.3■□□□□ 0.52
LDLR-213ENST00000560502 MAPK8IP3Q9UPT6 1336 aa18.29■□□□□ 0.52
LDLR-213ENST00000560502 SLC51AQ86UW1 340 aa18.29■□□□□ 0.52
LDLR-213ENST00000560502 RPGRQ92834 1020 aaKnown RBP18.29■□□□□ 0.52
LDLR-213ENST00000560502 CRAMP1Q96RY5 1269 aa18.29■□□□□ 0.52
LDLR-213ENST00000560502 TMEM88BA6NKF7 163 aa18.28■□□□□ 0.52
LDLR-213ENST00000560502 PDIA6Q15084 440 aa18.28■□□□□ 0.52
LDLR-213ENST00000560502 GRIPAP1Q4V328 841 aa18.28■□□□□ 0.52
LDLR-213ENST00000560502 C3orf67Q6ZVT6 689 aa18.28■□□□□ 0.52
LDLR-213ENST00000560502 PNMA8AQ86V59 439 aaPredicted RBP18.28■□□□□ 0.52
LDLR-213ENST00000560502 FAM9BQ8IZU0 186 aa18.28■□□□□ 0.52
LDLR-213ENST00000560502 PNNQ9H307 717 aaKnown RBP18.28■□□□□ 0.52
LDLR-213ENST00000560502 CAPN15O75808 1086 aa18.27■□□□□ 0.52
LDLR-213ENST00000560502 JDP2Q8WYK2 163 aa18.27■□□□□ 0.52
LDLR-213ENST00000560502 PPEF1O14829 653 aaPredicted RBP18.26■□□□□ 0.51
LDLR-213ENST00000560502 PARP10Q53GL7 1025 aa18.26■□□□□ 0.51
LDLR-213ENST00000560502 RBM17Q96I25 401 aaKnown RBP18.26■□□□□ 0.51
LDLR-213ENST00000560502 TSPYL4Q9UJ04 414 aa18.26■□□□□ 0.51
LDLR-213ENST00000560502 CLEC11AQ9Y240 323 aa18.26■□□□□ 0.51
LDLR-213ENST00000560502 THSD7BQ9C0I4 1608 aa18.26■□□□□ 0.51
LDLR-213ENST00000560502 FOXN1O15353 648 aa18.25■□□□□ 0.51
LDLR-213ENST00000560502 VEGFBP49765 207 aa18.25■□□□□ 0.51
LDLR-213ENST00000560502 EIF6P56537 245 aaKnown RBP18.25■□□□□ 0.51
LDLR-213ENST00000560502 PROSER3Q2NL68 480 aa18.25■□□□□ 0.51
LDLR-213ENST00000560502 SLC10A5Q5PT55 438 aa18.25■□□□□ 0.51
LDLR-213ENST00000560502 MAP1SQ66K74 1059 aaPredicted RBP18.25■□□□□ 0.51
LDLR-213ENST00000560502 PPP1R42Q7Z4L9 355 aa18.25■□□□□ 0.51
LDLR-213ENST00000560502 CNTROBQ8N137 903 aa18.25■□□□□ 0.51
LDLR-213ENST00000560502 BABAM1Q9NWV8 329 aa18.25■□□□□ 0.51
LDLR-213ENST00000560502 ZBED9Q6R2W3 1325 aa18.24■□□□□ 0.51
LDLR-213ENST00000560502 TRPM7Q96QT4 1865 aa18.24■□□□□ 0.51
LDLR-213ENST00000560502 SCNN1DP51172 638 aa18.24■□□□□ 0.51
LDLR-213ENST00000560502 HNRNPUQ00839 825 aaKnown RBP eCLIP18.24■□□□□ 0.51
LDLR-213ENST00000560502 LARGE2Q8N3Y3 721 aa18.24■□□□□ 0.51
LDLR-213ENST00000560502 RASSF10A6NK89 507 aa18.23■□□□□ 0.51
LDLR-213ENST00000560502 RIPK4P57078 832 aa18.23■□□□□ 0.51
LDLR-213ENST00000560502 GJA3Q9Y6H8 435 aa18.23■□□□□ 0.51
LDLR-213ENST00000560502 ANXA1P04083 346 aa18.22■□□□□ 0.51
LDLR-213ENST00000560502 NLRP3Q96P20 1036 aa18.22■□□□□ 0.51
LDLR-213ENST00000560502 UTP14AQ9BVJ6 771 aaKnown RBP18.22■□□□□ 0.51
LDLR-213ENST00000560502 ATP6V0A2Q9Y487 856 aa18.22■□□□□ 0.51
LDLR-213ENST00000560502 ABCC4O15439 1325 aa18.22■□□□□ 0.51
LDLR-213ENST00000560502 LRRC37AA6NMS7 1700 aa18.21■□□□□ 0.51
LDLR-213ENST00000560502 TAF1P21675 1872 aa18.21■□□□□ 0.51
LDLR-213ENST00000560502 EIF2S2P20042 333 aaKnown RBP18.21■□□□□ 0.51
LDLR-213ENST00000560502 TMPOP42166 694 aaKnown RBP18.21■□□□□ 0.51
LDLR-213ENST00000560502 EPS15P42566 896 aa18.21■□□□□ 0.51
LDLR-213ENST00000560502 WDR43Q15061 677 aaKnown RBP eCLIP18.21■□□□□ 0.51
LDLR-213ENST00000560502 PRDM10Q9NQV6 1147 aa18.21■□□□□ 0.51
LDLR-213ENST00000560502 WBP1LQ9NX94 342 aa18.21■□□□□ 0.51
LDLR-213ENST00000560502 DDX60Q8IY21 1712 aaKnown RBP18.2■□□□□ 0.5
LDLR-213ENST00000560502 TCERG1O14776 1098 aaKnown RBP18.2■□□□□ 0.5
LDLR-213ENST00000560502 LMOD1P29536 600 aaPredicted RBP18.2■□□□□ 0.5
LDLR-213ENST00000560502 NIM1KQ8IY84 436 aa18.2■□□□□ 0.5
LDLR-213ENST00000560502 RTFDC1Q9BY42 306 aaPredicted RBP18.2■□□□□ 0.5
LDLR-213ENST00000560502 VPS33BQ9H267 617 aa18.2■□□□□ 0.5
LDLR-213ENST00000560502 PPIP5K2O43314 1243 aa18.19■□□□□ 0.5
LDLR-213ENST00000560502 LMOD3Q0VAK6 560 aa18.19■□□□□ 0.5
LDLR-213ENST00000560502 DEFB115Q30KQ5 88 aa18.19■□□□□ 0.5
LDLR-213ENST00000560502 NLRP10Q86W26 655 aa18.19■□□□□ 0.5
LDLR-213ENST00000560502 DDX21Q9NR30 783 aaKnown RBP eCLIP18.19■□□□□ 0.5
LDLR-213ENST00000560502 DUOX1Q9NRD9 1551 aa18.19■□□□□ 0.5
LDLR-213ENST00000560502 CTCFP49711 727 aaPredicted RBP18.18■□□□□ 0.5
LDLR-213ENST00000560502 AOC3Q16853 763 aa18.18■□□□□ 0.5
LDLR-213ENST00000560502 HSP90AB3PQ58FF7 597 aa18.18■□□□□ 0.5
LDLR-213ENST00000560502 USP50Q70EL3 339 aaPredicted RBP18.18■□□□□ 0.5
LDLR-213ENST00000560502 COPS6Q7L5N1 327 aa18.18■□□□□ 0.5
LDLR-213ENST00000560502 XAGE3Q8WTP9 111 aa18.17■□□□□ 0.5
LDLR-213ENST00000560502 AIDAQ96BJ3 306 aa18.17■□□□□ 0.5
LDLR-213ENST00000560502 BBOX1O75936 387 aa18.16■□□□□ 0.5
LDLR-213ENST00000560502 FMR1Q06787 632 aaKnown RBP eCLIP18.16■□□□□ 0.56e-7■□□□□ 8.6
LDLR-213ENST00000560502 SP8Q8IXZ3 490 aa18.16■□□□□ 0.5
LDLR-213ENST00000560502 SUPT20HQ8NEM7 779 aa18.16■□□□□ 0.5
LDLR-213ENST00000560502 GPRC5DQ9NZD1 345 aa18.16■□□□□ 0.5
LDLR-213ENST00000560502 ZNRF3Q9ULT6 936 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms