RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 HSPA1BP0DMV9 641 aaKnown RBP21.01■□□□□ 0.95
SCFD1-224ENST00000557713 RIPK4P57078 832 aa21.01■□□□□ 0.95
SCFD1-224ENST00000557713 TSPYL4Q9UJ04 414 aa21.01■□□□□ 0.95
SCFD1-224ENST00000557713 HACL1Q9UJ83 578 aa21.01■□□□□ 0.95
SCFD1-224ENST00000557713 ITGBL1O95965 494 aaPredicted RBP21■□□□□ 0.95
SCFD1-224ENST00000557713 RALBP1Q15311 655 aa21■□□□□ 0.95
SCFD1-224ENST00000557713 RPGRQ92834 1020 aaKnown RBP21■□□□□ 0.95
SCFD1-224ENST00000557713 CRAMP1Q96RY5 1269 aa21■□□□□ 0.95
SCFD1-224ENST00000557713 BABAM1Q9NWV8 329 aa21■□□□□ 0.95
SCFD1-224ENST00000557713 GPC2Q8N158 579 aa20.99■□□□□ 0.95
SCFD1-224ENST00000557713 MKRN1Q9UHC7 482 aaKnown RBP20.99■□□□□ 0.95
SCFD1-224ENST00000557713 EPHX2P34913 555 aa20.98■□□□□ 0.95
SCFD1-224ENST00000557713 TMPOP42166 694 aaKnown RBP20.98■□□□□ 0.95
SCFD1-224ENST00000557713 GRIPAP1Q4V328 841 aa20.98■□□□□ 0.95
SCFD1-224ENST00000557713 PARP10Q53GL7 1025 aa20.98■□□□□ 0.95
SCFD1-224ENST00000557713 C3orf67Q6ZVT6 689 aa20.98■□□□□ 0.95
SCFD1-224ENST00000557713 PPP1R42Q7Z4L9 355 aa20.98■□□□□ 0.95
SCFD1-224ENST00000557713 JDP2Q8WYK2 163 aa20.98■□□□□ 0.95
SCFD1-224ENST00000557713 RBM17Q96I25 401 aaKnown RBP20.98■□□□□ 0.95
SCFD1-224ENST00000557713 EIF2S2P20042 333 aaKnown RBP20.97■□□□□ 0.95
SCFD1-224ENST00000557713 EAPPQ56P03 285 aaPredicted RBP20.97■□□□□ 0.95
SCFD1-224ENST00000557713 SLC10A5Q5PT55 438 aa20.97■□□□□ 0.95
SCFD1-224ENST00000557713 PNMA8AQ86V59 439 aaPredicted RBP20.97■□□□□ 0.95
SCFD1-224ENST00000557713 RNF123Q5XPI4 1314 aa20.97■□□□□ 0.95
SCFD1-224ENST00000557713 COL4A5P29400 1685 aa20.96■□□□□ 0.95
SCFD1-224ENST00000557713 ADAMTSL1Q8N6G6 1762 aa20.96■□□□□ 0.95
SCFD1-224ENST00000557713 PROSER3Q2NL68 480 aa20.96■□□□□ 0.95
SCFD1-224ENST00000557713 SLC51AQ86UW1 340 aa20.96■□□□□ 0.95
SCFD1-224ENST00000557713 CLEC11AQ9Y240 323 aa20.96■□□□□ 0.95
SCFD1-224ENST00000557713 ANXA1P04083 346 aa20.95■□□□□ 0.94
SCFD1-224ENST00000557713 TNS4Q8IZW8 715 aa20.95■□□□□ 0.94
SCFD1-224ENST00000557713 NLRP3Q96P20 1036 aa20.95■□□□□ 0.94
SCFD1-224ENST00000557713 CNTNAP1P78357 1384 aa20.95■□□□□ 0.94
SCFD1-224ENST00000557713 TMEM88BA6NKF7 163 aa20.94■□□□□ 0.94
SCFD1-224ENST00000557713 PPEF1O14829 653 aaPredicted RBP20.94■□□□□ 0.94
SCFD1-224ENST00000557713 LMOD3Q0VAK6 560 aa20.94■□□□□ 0.94
SCFD1-224ENST00000557713 UTP14AQ9BVJ6 771 aaKnown RBP20.94■□□□□ 0.94
SCFD1-224ENST00000557713 TCERG1O14776 1098 aaKnown RBP20.93■□□□□ 0.94
SCFD1-224ENST00000557713 EIF6P56537 245 aaKnown RBP20.93■□□□□ 0.94
SCFD1-224ENST00000557713 COPS6Q7L5N1 327 aa20.92■□□□□ 0.94
SCFD1-224ENST00000557713 CNTROBQ8N137 903 aa20.92■□□□□ 0.94
SCFD1-224ENST00000557713 LARGE2Q8N3Y3 721 aa20.92■□□□□ 0.94
SCFD1-224ENST00000557713 GJA3Q9Y6H8 435 aa20.92■□□□□ 0.94
SCFD1-224ENST00000557713 CHL1O00533 1208 aa20.91■□□□□ 0.94
SCFD1-224ENST00000557713 MAP1SQ66K74 1059 aaPredicted RBP20.91■□□□□ 0.94
SCFD1-224ENST00000557713 ATP6V0A2Q9Y487 856 aa20.91■□□□□ 0.94
SCFD1-224ENST00000557713 NLRP10Q86W26 655 aa20.9■□□□□ 0.94
SCFD1-224ENST00000557713 XAGE3Q8WTP9 111 aa20.9■□□□□ 0.94
SCFD1-224ENST00000557713 NECTIN2Q92692 538 aa20.9■□□□□ 0.94
SCFD1-224ENST00000557713 MYBBP1AQ9BQG0 1328 aaKnown RBP20.89■□□□□ 0.93
SCFD1-224ENST00000557713 VEGFBP49765 207 aa20.89■□□□□ 0.93
SCFD1-224ENST00000557713 SCNN1DP51172 638 aa20.89■□□□□ 0.93
SCFD1-224ENST00000557713 AIMP1Q12904 312 aaKnown RBP20.89■□□□□ 0.93
SCFD1-224ENST00000557713 HSP90AB3PQ58FF7 597 aa20.89■□□□□ 0.93
SCFD1-224ENST00000557713 CCDC146Q8IYE0 955 aa20.89■□□□□ 0.93
SCFD1-224ENST00000557713 VPS33BQ9H267 617 aa20.89■□□□□ 0.93
SCFD1-224ENST00000557713 DDX21Q9NR30 783 aaKnown RBP eCLIP20.89■□□□□ 0.93
SCFD1-224ENST00000557713 TRIM35Q9UPQ4 493 aa20.89■□□□□ 0.93
SCFD1-224ENST00000557713 ABCC4O15439 1325 aa20.88■□□□□ 0.93
SCFD1-224ENST00000557713 LTBP1Q14766 1721 aa20.88■□□□□ 0.93
SCFD1-224ENST00000557713 BBOX1O75936 387 aa20.88■□□□□ 0.93
SCFD1-224ENST00000557713 EPS15P42566 896 aa20.88■□□□□ 0.93
SCFD1-224ENST00000557713 DDX10Q13206 875 aaKnown RBP20.88■□□□□ 0.93
SCFD1-224ENST00000557713 TCIRG1Q13488 830 aa20.88■□□□□ 0.93
SCFD1-224ENST00000557713 NEUROD2Q15784 382 aa20.88■□□□□ 0.93
SCFD1-224ENST00000557713 KRT24Q2M2I5 525 aa20.88■□□□□ 0.93
SCFD1-224ENST00000557713 LMOD1P29536 600 aaPredicted RBP20.87■□□□□ 0.93
SCFD1-224ENST00000557713 SP8Q8IXZ3 490 aa20.87■□□□□ 0.93
SCFD1-224ENST00000557713 NIM1KQ8IY84 436 aa20.87■□□□□ 0.93
SCFD1-224ENST00000557713 RUNDC1Q96C34 613 aa20.87■□□□□ 0.93
SCFD1-224ENST00000557713 RTFDC1Q9BY42 306 aaPredicted RBP20.87■□□□□ 0.93
SCFD1-224ENST00000557713 TMX4Q9H1E5 349 aaPredicted RBP20.87■□□□□ 0.93
SCFD1-224ENST00000557713 RASSF10A6NK89 507 aa20.86■□□□□ 0.93
SCFD1-224ENST00000557713 FOXN1O15353 648 aa20.86■□□□□ 0.93
SCFD1-224ENST00000557713 PPIP5K2O43314 1243 aa20.86■□□□□ 0.93
SCFD1-224ENST00000557713 CAPN15O75808 1086 aa20.86■□□□□ 0.93
SCFD1-224ENST00000557713 HCLS1P14317 486 aaPredicted RBP20.86■□□□□ 0.93
SCFD1-224ENST00000557713 AOC3Q16853 763 aa20.86■□□□□ 0.93
SCFD1-224ENST00000557713 TRMT112Q9UI30 125 aaKnown RBP20.86■□□□□ 0.93
SCFD1-224ENST00000557713 ANKRD36CQ5JPF3 1778 aa20.85■□□□□ 0.93
SCFD1-224ENST00000557713 DEFB115Q30KQ5 88 aa20.85■□□□□ 0.93
SCFD1-224ENST00000557713 USP50Q70EL3 339 aaPredicted RBP20.85■□□□□ 0.93
SCFD1-224ENST00000557713 SUPT20HQ8NEM7 779 aa20.85■□□□□ 0.93
SCFD1-224ENST00000557713 ZNRF3Q9ULT6 936 aa20.84■□□□□ 0.93
SCFD1-224ENST00000557713 LAS1LQ9Y4W2 734 aaKnown RBP20.84■□□□□ 0.93
SCFD1-224ENST00000557713 SH3TC1Q8TE82 1336 aa20.83■□□□□ 0.93
SCFD1-224ENST00000557713 LAMB2P55268 1798 aa20.83■□□□□ 0.93
SCFD1-224ENST00000557713 CXCL9Q07325 125 aa20.83■□□□□ 0.93
SCFD1-224ENST00000557713 DDX46Q7L014 1031 aaKnown RBP20.83■□□□□ 0.93
SCFD1-224ENST00000557713 CHPF2Q9P2E5 772 aa20.83■□□□□ 0.93
SCFD1-224ENST00000557713 ADAMTS8Q9UP79 889 aa20.83■□□□□ 0.93
SCFD1-224ENST00000557713 HOXB7P09629 217 aa20.82■□□□□ 0.92
SCFD1-224ENST00000557713 FMR1Q06787 632 aaKnown RBP eCLIP20.82■□□□□ 0.92
SCFD1-224ENST00000557713 GRAPQ13588 217 aa20.82■□□□□ 0.92
SCFD1-224ENST00000557713 DPP8Q6V1X1 898 aaPredicted RBP20.82■□□□□ 0.92
SCFD1-224ENST00000557713 MPNDQ8N594 471 aa20.82■□□□□ 0.92
SCFD1-224ENST00000557713 GRAPLQ8TC17 118 aaPredicted RBP20.82■□□□□ 0.92
SCFD1-224ENST00000557713 WBP1LQ9NX94 342 aa20.82■□□□□ 0.92
SCFD1-224ENST00000557713 GPRC5DQ9NZD1 345 aa20.82■□□□□ 0.92
SCFD1-224ENST00000557713 KIAA2012Q0VF49 1180 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms