RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CLEC11AQ9Y240 323 aa15.05■□□□□ -0
NEK3-204ENST00000552973 ERBB4Q15303 1308 aa15.05■□□□□ -0
NEK3-204ENST00000552973 CCDC88AQ3V6T2 1871 aa15.05■□□□□ -0
NEK3-204ENST00000552973 RNF123Q5XPI4 1314 aa15.04■□□□□ -0
NEK3-204ENST00000552973 MYBBP1AQ9BQG0 1328 aaKnown RBP15.04■□□□□ -0
NEK3-204ENST00000552973 FZD9O00144 591 aa15.04■□□□□ -0
NEK3-204ENST00000552973 HOXA10P31260 410 aaPredicted RBP15.04■□□□□ -0
NEK3-204ENST00000552973 LMOD3Q0VAK6 560 aa15.04■□□□□ -0
NEK3-204ENST00000552973 COPS6Q7L5N1 327 aa15.04■□□□□ -0
NEK3-204ENST00000552973 UTP14AQ9BVJ6 771 aaKnown RBP15.04■□□□□ -0
NEK3-204ENST00000552973 MKRN1Q9UHC7 482 aaKnown RBP15.04■□□□□ -0
NEK3-204ENST00000552973 HACL1Q9UJ83 578 aa15.04■□□□□ -0
NEK3-204ENST00000552973 KDM3BQ7LBC6 1761 aa15.03■□□□□ -0
NEK3-204ENST00000552973 PPEF1O14829 653 aaPredicted RBP15.03■□□□□ -0
NEK3-204ENST00000552973 HSPA1AP0DMV8 641 aaKnown RBP15.03■□□□□ -0
NEK3-204ENST00000552973 HSPA1BP0DMV9 641 aaKnown RBP15.03■□□□□ -0
NEK3-204ENST00000552973 LDHDQ86WU2 507 aa15.03■□□□□ -0
NEK3-204ENST00000552973 XAGE3Q8WTP9 111 aa15.03■□□□□ -0
NEK3-204ENST00000552973 JDP2Q8WYK2 163 aa15.03■□□□□ -0
NEK3-204ENST00000552973 NLRP3Q96P20 1036 aa15.03■□□□□ -0
NEK3-204ENST00000552973 PSMD1Q99460 953 aa15.03■□□□□ -0
NEK3-204ENST00000552973 GJA3Q9Y6H8 435 aa15.03■□□□□ -0
NEK3-204ENST00000552973 CACNA1SQ13698 1873 aa15.02■□□□□ -0
NEK3-204ENST00000552973 EPHX2P34913 555 aa15.02■□□□□ -0
NEK3-204ENST00000552973 WDR43Q15061 677 aaKnown RBP eCLIP15.02■□□□□ -0
NEK3-204ENST00000552973 PARP10Q53GL7 1025 aa15.02■□□□□ -0
NEK3-204ENST00000552973 CC2D2BQ6DHV5 1058 aa15.02■□□□□ -0
NEK3-204ENST00000552973 CRAMP1Q96RY5 1269 aa15.02■□□□□ -0
NEK3-204ENST00000552973 CREBZFQ9NS37 354 aa15.02■□□□□ -0
NEK3-204ENST00000552973 BABAM1Q9NWV8 329 aa15.02■□□□□ -0
NEK3-204ENST00000552973 ADAMTS8Q9UP79 889 aa15.02■□□□□ -0
NEK3-204ENST00000552973 TRIM35Q9UPQ4 493 aa15.02■□□□□ -0
NEK3-204ENST00000552973 DLG5Q8TDM6 1919 aa15.02□□□□□ -0.01
NEK3-204ENST00000552973 LAMB4A4D0S4 1761 aa15.01□□□□□ -0.01
NEK3-204ENST00000552973 IBTKQ9P2D0 1353 aaPredicted RBP15.01□□□□□ -0.01
NEK3-204ENST00000552973 HCLS1P14317 486 aaPredicted RBP15.01□□□□□ -0.01
NEK3-204ENST00000552973 EIF6P56537 245 aaKnown RBP15.01□□□□□ -0.01
NEK3-204ENST00000552973 LARGE2Q8N3Y3 721 aa15.01□□□□□ -0.01
NEK3-204ENST00000552973 RUNDC1Q96C34 613 aa15.01□□□□□ -0.01
NEK3-204ENST00000552973 CHL1O00533 1208 aa15□□□□□ -0.01
NEK3-204ENST00000552973 ITGBL1O95965 494 aaPredicted RBP15□□□□□ -0.01
NEK3-204ENST00000552973 SLC10A5Q5PT55 438 aa15□□□□□ -0.01
NEK3-204ENST00000552973 MAP1SQ66K74 1059 aaPredicted RBP15□□□□□ -0.01
NEK3-204ENST00000552973 GPC2Q8N158 579 aa15□□□□□ -0.01
NEK3-204ENST00000552973 SNED1Q8TER0 1413 aa15□□□□□ -0.01
NEK3-204ENST00000552973 PASKQ96RG2 1323 aa14.99□□□□□ -0.01
NEK3-204ENST00000552973 TCIRG1Q13488 830 aa14.99□□□□□ -0.01
NEK3-204ENST00000552973 NLRP10Q86W26 655 aa14.99□□□□□ -0.01
NEK3-204ENST00000552973 DDX21Q9NR30 783 aaKnown RBP eCLIP14.99□□□□□ -0.01
NEK3-204ENST00000552973 CHPF2Q9P2E5 772 aa14.99□□□□□ -0.01
NEK3-204ENST00000552973 ARFGEF2Q9Y6D5 1785 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 ABCC4O15439 1325 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 DICER1Q9UPY3 1922 aaKnown RBP14.98□□□□□ -0.01
NEK3-204ENST00000552973 PPIP5K2O43314 1243 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 CAPN15O75808 1086 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 HSP90AB3PQ58FF7 597 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 PNMA8AQ86V59 439 aaPredicted RBP14.98□□□□□ -0.01
NEK3-204ENST00000552973 NIM1KQ8IY84 436 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 CNTROBQ8N137 903 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 TMX4Q9H1E5 349 aaPredicted RBP14.98□□□□□ -0.01
NEK3-204ENST00000552973 TRMT112Q9UI30 125 aaKnown RBP14.98□□□□□ -0.01
NEK3-204ENST00000552973 ATP6V0A2Q9Y487 856 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 RIC1Q4ADV7 1423 aa14.98□□□□□ -0.01
NEK3-204ENST00000552973 COL4A5P29400 1685 aa14.97□□□□□ -0.01
NEK3-204ENST00000552973 AOC3Q16853 763 aa14.97□□□□□ -0.01
NEK3-204ENST00000552973 HDGFL1Q5TGJ6 251 aa14.97□□□□□ -0.01
NEK3-204ENST00000552973 TNS4Q8IZW8 715 aa14.97□□□□□ -0.01
NEK3-204ENST00000552973 TMEM88BA6NKF7 163 aa14.96□□□□□ -0.01
NEK3-204ENST00000552973 LMOD1P29536 600 aaPredicted RBP14.96□□□□□ -0.01
NEK3-204ENST00000552973 EPS15P42566 896 aa14.96□□□□□ -0.01
NEK3-204ENST00000552973 SCNN1DP51172 638 aa14.96□□□□□ -0.01
NEK3-204ENST00000552973 GRIPAP1Q4V328 841 aa14.96□□□□□ -0.01
NEK3-204ENST00000552973 NUP98P52948 1817 aa14.96□□□□□ -0.01
NEK3-204ENST00000552973 SH3TC1Q8TE82 1336 aa14.95□□□□□ -0.02
NEK3-204ENST00000552973 ATP5J2-PTCD1G3V325 749 aa14.95□□□□□ -0.02
NEK3-204ENST00000552973 FMR1Q06787 632 aaKnown RBP eCLIP14.95□□□□□ -0.02
NEK3-204ENST00000552973 ANKRD13DQ6ZTN6 518 aa14.95□□□□□ -0.02
NEK3-204ENST00000552973 DDX46Q7L014 1031 aaKnown RBP14.95□□□□□ -0.02
NEK3-204ENST00000552973 BBOX1O75936 387 aa14.94□□□□□ -0.02
NEK3-204ENST00000552973 VEGFBP49765 207 aa14.94□□□□□ -0.02
NEK3-204ENST00000552973 RTL5Q5HYW3 569 aaPredicted RBP14.94□□□□□ -0.02
NEK3-204ENST00000552973 DUSP27Q5VZP5 1158 aa14.94□□□□□ -0.02
NEK3-204ENST00000552973 DPP8Q6V1X1 898 aaPredicted RBP14.94□□□□□ -0.02
NEK3-204ENST00000552973 SP8Q8IXZ3 490 aa14.94□□□□□ -0.02
NEK3-204ENST00000552973 MPNDQ8N594 471 aa14.94□□□□□ -0.02
NEK3-204ENST00000552973 CFAP44Q96MT7 982 aa14.94□□□□□ -0.02
NEK3-204ENST00000552973 PRKRIP1Q9H875 184 aaPredicted RBP14.94□□□□□ -0.02
NEK3-204ENST00000552973 CNTNAP1P78357 1384 aa14.94□□□□□ -0.02
NEK3-204ENST00000552973 ELL2O00472 640 aaPredicted RBP14.93□□□□□ -0.02
NEK3-204ENST00000552973 APAF1O14727 1248 aa14.93□□□□□ -0.02
NEK3-204ENST00000552973 CXCL9Q07325 125 aa14.93□□□□□ -0.02
NEK3-204ENST00000552973 GRAPQ13588 217 aa14.93□□□□□ -0.02
NEK3-204ENST00000552973 PLBD2Q8NHP8 589 aa14.93□□□□□ -0.02
NEK3-204ENST00000552973 GRAPLQ8TC17 118 aaPredicted RBP14.93□□□□□ -0.02
NEK3-204ENST00000552973 FAM89AQ96GI7 184 aa14.93□□□□□ -0.02
NEK3-204ENST00000552973 MBIPQ9NS73 344 aa14.93□□□□□ -0.02
NEK3-204ENST00000552973 DBF4Q9UBU7 674 aaPredicted RBP14.93□□□□□ -0.02
NEK3-204ENST00000552973 SUPT20HQ8NEM7 779 aa14.92□□□□□ -0.02
NEK3-204ENST00000552973 ISCA1Q9BUE6 129 aa14.92□□□□□ -0.02
NEK3-204ENST00000552973 RTFDC1Q9BY42 306 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms