RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 PNMA8AQ86V59 439 aaPredicted RBP16.93■□□□□ 0.3
PTCH1-221ENST00000550914 GPC2Q8N158 579 aa16.93■□□□□ 0.3
PTCH1-221ENST00000550914 JDP2Q8WYK2 163 aa16.93■□□□□ 0.3
PTCH1-221ENST00000550914 PARP10Q53GL7 1025 aa16.92■□□□□ 0.3
PTCH1-221ENST00000550914 SUSD4Q5VX71 490 aa16.92■□□□□ 0.3
PTCH1-221ENST00000550914 PPP1R42Q7Z4L9 355 aa16.92■□□□□ 0.3
PTCH1-221ENST00000550914 CRAMP1Q96RY5 1269 aa16.92■□□□□ 0.3
PTCH1-221ENST00000550914 ZBTB3Q9H5J0 574 aa16.92■□□□□ 0.3
PTCH1-221ENST00000550914 TSPYL4Q9UJ04 414 aa16.92■□□□□ 0.3
PTCH1-221ENST00000550914 ANKRD36CQ5JPF3 1778 aa16.92■□□□□ 0.3
PTCH1-221ENST00000550914 CNTNAP1P78357 1384 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 NTSR2O95665 410 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 ITGBL1O95965 494 aaPredicted RBP16.91■□□□□ 0.3
PTCH1-221ENST00000550914 GPTP24298 496 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 EPHX2P34913 555 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 RALBP1Q15311 655 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 LRP10Q7Z4F1 713 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 TNS4Q8IZW8 715 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 RBM17Q96I25 401 aaKnown RBP16.91■□□□□ 0.3
PTCH1-221ENST00000550914 RNF123Q5XPI4 1314 aa16.91■□□□□ 0.3
PTCH1-221ENST00000550914 RIPK4P57078 832 aa16.9■□□□□ 0.3
PTCH1-221ENST00000550914 LMOD3Q0VAK6 560 aa16.9■□□□□ 0.3
PTCH1-221ENST00000550914 EAPPQ56P03 285 aaPredicted RBP16.9■□□□□ 0.3
PTCH1-221ENST00000550914 TMEM88BA6NKF7 163 aa16.89■□□□□ 0.29
PTCH1-221ENST00000550914 EIF6P56537 245 aaKnown RBP16.89■□□□□ 0.29
PTCH1-221ENST00000550914 PDIA6Q15084 440 aa16.89■□□□□ 0.29
PTCH1-221ENST00000550914 MKRN1Q9UHC7 482 aaKnown RBP16.89■□□□□ 0.29
PTCH1-221ENST00000550914 SLC10A5Q5PT55 438 aa16.88■□□□□ 0.29
PTCH1-221ENST00000550914 NLRP3Q96P20 1036 aa16.88■□□□□ 0.29
PTCH1-221ENST00000550914 VPS33BQ9H267 617 aa16.88■□□□□ 0.29
PTCH1-221ENST00000550914 CLEC11AQ9Y240 323 aa16.88■□□□□ 0.29
PTCH1-221ENST00000550914 COL4A5P29400 1685 aa16.88■□□□□ 0.29
PTCH1-221ENST00000550914 LAMB2P55268 1798 aa16.87■□□□□ 0.29
PTCH1-221ENST00000550914 PPEF1O14829 653 aaPredicted RBP16.87■□□□□ 0.29
PTCH1-221ENST00000550914 TMPOP42166 694 aaKnown RBP16.87■□□□□ 0.29
PTCH1-221ENST00000550914 UTP14AQ9BVJ6 771 aaKnown RBP16.87■□□□□ 0.29
PTCH1-221ENST00000550914 EIF2S2P20042 333 aaKnown RBP16.86■□□□□ 0.29
PTCH1-221ENST00000550914 HSP90AB3PQ58FF7 597 aa16.86■□□□□ 0.29
PTCH1-221ENST00000550914 LARGE2Q8N3Y3 721 aa16.86■□□□□ 0.29
PTCH1-221ENST00000550914 TMX4Q9H1E5 349 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-221ENST00000550914 LTBP1Q14766 1721 aa16.85■□□□□ 0.29
PTCH1-221ENST00000550914 LMOD1P29536 600 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-221ENST00000550914 C3orf67Q6ZVT6 689 aa16.85■□□□□ 0.29
PTCH1-221ENST00000550914 CNTROBQ8N137 903 aa16.85■□□□□ 0.29
PTCH1-221ENST00000550914 ATP6V0A2Q9Y487 856 aa16.85■□□□□ 0.29
PTCH1-221ENST00000550914 TRPM7Q96QT4 1865 aa16.84■□□□□ 0.29
PTCH1-221ENST00000550914 PROSER3Q2NL68 480 aa16.84■□□□□ 0.29
PTCH1-221ENST00000550914 NIM1KQ8IY84 436 aa16.84■□□□□ 0.29
PTCH1-221ENST00000550914 GJA3Q9Y6H8 435 aa16.84■□□□□ 0.29
PTCH1-221ENST00000550914 RASSF10A6NK89 507 aa16.83■□□□□ 0.28
PTCH1-221ENST00000550914 BBOX1O75936 387 aa16.83■□□□□ 0.28
PTCH1-221ENST00000550914 VEGFBP49765 207 aa16.83■□□□□ 0.28
PTCH1-221ENST00000550914 SCNN1DP51172 638 aa16.83■□□□□ 0.28
PTCH1-221ENST00000550914 MAP1SQ66K74 1059 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-221ENST00000550914 SUPT20HQ8NEM7 779 aa16.83■□□□□ 0.28
PTCH1-221ENST00000550914 RTFDC1Q9BY42 306 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-221ENST00000550914 DDX21Q9NR30 783 aaKnown RBP eCLIP16.83■□□□□ 0.28
PTCH1-221ENST00000550914 ABCC4O15439 1325 aa16.82■□□□□ 0.28
PTCH1-221ENST00000550914 MYBBP1AQ9BQG0 1328 aaKnown RBP16.82■□□□□ 0.28
PTCH1-221ENST00000550914 CHL1O00533 1208 aa16.82■□□□□ 0.28
PTCH1-221ENST00000550914 USP50Q70EL3 339 aaPredicted RBP16.82■□□□□ 0.28
PTCH1-221ENST00000550914 COPS6Q7L5N1 327 aa16.82■□□□□ 0.28
PTCH1-221ENST00000550914 NLRP10Q86W26 655 aa16.82■□□□□ 0.28
PTCH1-221ENST00000550914 TCERG1O14776 1098 aaKnown RBP16.81■□□□□ 0.28
PTCH1-221ENST00000550914 FOXN1O15353 648 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 PPIP5K2O43314 1243 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 ANXA1P04083 346 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 HOXB7P09629 217 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 TCIRG1Q13488 830 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 SP8Q8IXZ3 490 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 XAGE3Q8WTP9 111 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 PRDM10Q9NQV6 1147 aa16.81■□□□□ 0.28
PTCH1-221ENST00000550914 SH3TC1Q8TE82 1336 aa16.8■□□□□ 0.28
PTCH1-221ENST00000550914 EPS15P42566 896 aa16.8■□□□□ 0.28
PTCH1-221ENST00000550914 DEFB115Q30KQ5 88 aa16.8■□□□□ 0.28
PTCH1-221ENST00000550914 AIDAQ96BJ3 306 aa16.8■□□□□ 0.28
PTCH1-221ENST00000550914 WBP1LQ9NX94 342 aa16.8■□□□□ 0.28
PTCH1-221ENST00000550914 ZNRF3Q9ULT6 936 aa16.8■□□□□ 0.28
PTCH1-221ENST00000550914 LRRC37AA6NMS7 1700 aa16.79■□□□□ 0.28
PTCH1-221ENST00000550914 CAPN15O75808 1086 aa16.79■□□□□ 0.28
PTCH1-221ENST00000550914 CTCFP49711 727 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-221ENST00000550914 AIMP1Q12904 312 aaKnown RBP16.79■□□□□ 0.28
PTCH1-221ENST00000550914 AOC3Q16853 763 aa16.79■□□□□ 0.28
PTCH1-221ENST00000550914 TMC4Q7Z404 712 aa16.79■□□□□ 0.28
PTCH1-221ENST00000550914 SLC51AQ86UW1 340 aa16.79■□□□□ 0.28
PTCH1-221ENST00000550914 RUNDC1Q96C34 613 aa16.79■□□□□ 0.28
PTCH1-221ENST00000550914 TRMT112Q9UI30 125 aaKnown RBP16.79■□□□□ 0.28
PTCH1-221ENST00000550914 TAF1P21675 1872 aa16.79■□□□□ 0.28
PTCH1-221ENST00000550914 DDX60Q8IY21 1712 aaKnown RBP16.79■□□□□ 0.28
PTCH1-221ENST00000550914 CDHR2Q9BYE9 1310 aa16.78■□□□□ 0.28
PTCH1-221ENST00000550914 GRAPQ13588 217 aa16.78■□□□□ 0.28
PTCH1-221ENST00000550914 DPP8Q6V1X1 898 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-221ENST00000550914 DDX46Q7L014 1031 aaKnown RBP16.78■□□□□ 0.28
PTCH1-221ENST00000550914 MPNDQ8N594 471 aa16.78■□□□□ 0.28
PTCH1-221ENST00000550914 GRAPLQ8TC17 118 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-221ENST00000550914 NECTIN2Q92692 538 aa16.78■□□□□ 0.28
PTCH1-221ENST00000550914 ADARB2Q9NS39 739 aaKnown RBP16.78■□□□□ 0.28
PTCH1-221ENST00000550914 GPRC5DQ9NZD1 345 aa16.78■□□□□ 0.28
PTCH1-221ENST00000550914 TRIM35Q9UPQ4 493 aa16.78■□□□□ 0.28
PTCH1-221ENST00000550914 THSD7BQ9C0I4 1608 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms