RNA–Protein interactions for RNA: ENST00000546229.5

COPS7A-221, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3

Gene COPS7A, Length 744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-221ENST00000546229 ALDH1B1P30837 517 aa16.63■□□□□ 0.25
COPS7A-221ENST00000546229 PROSER3Q2NL68 480 aa16.63■□□□□ 0.25
COPS7A-221ENST00000546229 GIGYF2Q6Y7W6 1299 aaKnown RBP16.63■□□□□ 0.25
COPS7A-221ENST00000546229 SYNE4Q8N205 404 aa16.63■□□□□ 0.25
COPS7A-221ENST00000546229 ZBTB3Q9H5J0 574 aa16.63■□□□□ 0.25
COPS7A-221ENST00000546229 RNF123Q5XPI4 1314 aa16.63■□□□□ 0.25
COPS7A-221ENST00000546229 DDX60Q8IY21 1712 aaKnown RBP16.62■□□□□ 0.25
COPS7A-221ENST00000546229 MYL6BP14649 208 aa16.62■□□□□ 0.25
COPS7A-221ENST00000546229 NGEFQ8N5V2 710 aa16.62■□□□□ 0.25
COPS7A-221ENST00000546229 RRP7AQ9Y3A4 280 aaKnown RBP16.62■□□□□ 0.25
COPS7A-221ENST00000546229 COL4A1P02462 1669 aa16.62■□□□□ 0.25
COPS7A-221ENST00000546229 KIF6Q6ZMV9 814 aa16.61■□□□□ 0.25
COPS7A-221ENST00000546229 GPC2Q8N158 579 aa16.61■□□□□ 0.25
COPS7A-221ENST00000546229 CRAMP1Q96RY5 1269 aa16.61■□□□□ 0.25
COPS7A-221ENST00000546229 MKRN1Q9UHC7 482 aaKnown RBP16.61■□□□□ 0.25
COPS7A-221ENST00000546229 HACL1Q9UJ83 578 aa16.61■□□□□ 0.25
COPS7A-221ENST00000546229 EPHX2P34913 555 aa16.6■□□□□ 0.25
COPS7A-221ENST00000546229 CC2D2BQ6DHV5 1058 aa16.6■□□□□ 0.25
COPS7A-221ENST00000546229 SCNN1DP51172 638 aa16.59■□□□□ 0.25
COPS7A-221ENST00000546229 BABAM1Q9NWV8 329 aa16.59■□□□□ 0.25
COPS7A-221ENST00000546229 ANXA1P04083 346 aa16.58■□□□□ 0.24
COPS7A-221ENST00000546229 SLC10A5Q5PT55 438 aa16.58■□□□□ 0.24
COPS7A-221ENST00000546229 TNS4Q8IZW8 715 aa16.58■□□□□ 0.24
COPS7A-221ENST00000546229 TSPYL4Q9UJ04 414 aa16.58■□□□□ 0.24
COPS7A-221ENST00000546229 MAPK8IP3Q9UPT6 1336 aa16.58■□□□□ 0.24
COPS7A-221ENST00000546229 TAF1P21675 1872 aa16.58■□□□□ 0.24
COPS7A-221ENST00000546229 ABCC4O15439 1325 aa16.57■□□□□ 0.24
COPS7A-221ENST00000546229 PPEF1O14829 653 aaPredicted RBP16.57■□□□□ 0.24
COPS7A-221ENST00000546229 GTF2E1P29083 439 aaPredicted RBP16.57■□□□□ 0.24
COPS7A-221ENST00000546229 TMPOP42166 694 aaKnown RBP16.57■□□□□ 0.24
COPS7A-221ENST00000546229 PARP10Q53GL7 1025 aa16.57■□□□□ 0.24
COPS7A-221ENST00000546229 RASSF10A6NK89 507 aa16.56■□□□□ 0.24
COPS7A-221ENST00000546229 TMEM88BA6NKF7 163 aa16.56■□□□□ 0.24
COPS7A-221ENST00000546229 FOXN1O15353 648 aa16.56■□□□□ 0.24
COPS7A-221ENST00000546229 NEFMP07197 916 aa16.56■□□□□ 0.24
COPS7A-221ENST00000546229 VEGFBP49765 207 aa16.56■□□□□ 0.24
COPS7A-221ENST00000546229 EAPPQ56P03 285 aaPredicted RBP16.56■□□□□ 0.24
COPS7A-221ENST00000546229 MAP1SQ66K74 1059 aaPredicted RBP16.56■□□□□ 0.24
COPS7A-221ENST00000546229 RPGRQ92834 1020 aaKnown RBP16.56■□□□□ 0.24
COPS7A-221ENST00000546229 TRPM7Q96QT4 1865 aa16.56■□□□□ 0.24
COPS7A-221ENST00000546229 RIPK4P57078 832 aa16.55■□□□□ 0.24
COPS7A-221ENST00000546229 KRT24Q2M2I5 525 aa16.55■□□□□ 0.24
COPS7A-221ENST00000546229 GRIPAP1Q4V328 841 aa16.55■□□□□ 0.24
COPS7A-221ENST00000546229 PNMA8AQ86V59 439 aaPredicted RBP16.55■□□□□ 0.24
COPS7A-221ENST00000546229 RTFDC1Q9BY42 306 aaPredicted RBP16.55■□□□□ 0.24
COPS7A-221ENST00000546229 TRIM35Q9UPQ4 493 aa16.55■□□□□ 0.24
COPS7A-221ENST00000546229 RALBP1Q15311 655 aa16.54■□□□□ 0.24
COPS7A-221ENST00000546229 NLRP10Q86W26 655 aa16.54■□□□□ 0.24
COPS7A-221ENST00000546229 CNTROBQ8N137 903 aa16.54■□□□□ 0.24
COPS7A-221ENST00000546229 RBM17Q96I25 401 aaKnown RBP16.54■□□□□ 0.24
COPS7A-221ENST00000546229 PNNQ9H307 717 aaKnown RBP16.54■□□□□ 0.24
COPS7A-221ENST00000546229 ATP6V0A2Q9Y487 856 aa16.54■□□□□ 0.24
COPS7A-221ENST00000546229 CHL1O00533 1208 aa16.53■□□□□ 0.24
COPS7A-221ENST00000546229 EPS15P42566 896 aa16.53■□□□□ 0.24
COPS7A-221ENST00000546229 FMR1Q06787 632 aaKnown RBP eCLIP16.53■□□□□ 0.24
COPS7A-221ENST00000546229 PPP1R42Q7Z4L9 355 aa16.53■□□□□ 0.24
COPS7A-221ENST00000546229 JDP2Q8WYK2 163 aa16.53■□□□□ 0.24
COPS7A-221ENST00000546229 EIF2S2P20042 333 aaKnown RBP16.52■□□□□ 0.24
COPS7A-221ENST00000546229 LARGE2Q8N3Y3 721 aa16.52■□□□□ 0.24
COPS7A-221ENST00000546229 XAGE3Q8WTP9 111 aa16.52■□□□□ 0.24
COPS7A-221ENST00000546229 UTP14AQ9BVJ6 771 aaKnown RBP16.52■□□□□ 0.24
COPS7A-221ENST00000546229 WBP1LQ9NX94 342 aa16.52■□□□□ 0.24
COPS7A-221ENST00000546229 MYBBP1AQ9BQG0 1328 aaKnown RBP16.51■□□□□ 0.23
COPS7A-221ENST00000546229 EIF6P56537 245 aaKnown RBP16.51■□□□□ 0.23
COPS7A-221ENST00000546229 AOC3Q16853 763 aa16.51■□□□□ 0.23
COPS7A-221ENST00000546229 COPS6Q7L5N1 327 aa16.51■□□□□ 0.23
COPS7A-221ENST00000546229 DDX21Q9NR30 783 aaKnown RBP eCLIP16.51■□□□□ 0.23
COPS7A-221ENST00000546229 LMOD3Q0VAK6 560 aa16.5■□□□□ 0.23
COPS7A-221ENST00000546229 NLRP3Q96P20 1036 aa16.5■□□□□ 0.23
COPS7A-221ENST00000546229 VPS33BQ9H267 617 aa16.5■□□□□ 0.23
COPS7A-221ENST00000546229 PRDM10Q9NQV6 1147 aa16.5■□□□□ 0.23
COPS7A-221ENST00000546229 GJA3Q9Y6H8 435 aa16.5■□□□□ 0.23
COPS7A-221ENST00000546229 TCERG1O14776 1098 aaKnown RBP16.49■□□□□ 0.23
COPS7A-221ENST00000546229 PPIP5K2O43314 1243 aa16.49■□□□□ 0.23
COPS7A-221ENST00000546229 CAPN15O75808 1086 aa16.49■□□□□ 0.23
COPS7A-221ENST00000546229 HCLS1P14317 486 aaPredicted RBP16.49■□□□□ 0.23
COPS7A-221ENST00000546229 TCIRG1Q13488 830 aa16.49■□□□□ 0.23
COPS7A-221ENST00000546229 CCDC146Q8IYE0 955 aa16.49■□□□□ 0.23
COPS7A-221ENST00000546229 GPRC5DQ9NZD1 345 aa16.49■□□□□ 0.23
COPS7A-221ENST00000546229 CHPF2Q9P2E5 772 aa16.49■□□□□ 0.23
COPS7A-221ENST00000546229 CXCL9Q07325 125 aa16.48■□□□□ 0.23
COPS7A-221ENST00000546229 KIAA2012Q0VF49 1180 aa16.48■□□□□ 0.23
COPS7A-221ENST00000546229 CST9Q5W186 159 aa16.48■□□□□ 0.23
COPS7A-221ENST00000546229 USP50Q70EL3 339 aaPredicted RBP16.48■□□□□ 0.23
COPS7A-221ENST00000546229 NIM1KQ8IY84 436 aa16.48■□□□□ 0.23
COPS7A-221ENST00000546229 NECTIN2Q92692 538 aa16.48■□□□□ 0.23
COPS7A-221ENST00000546229 ISCA1Q9BUE6 129 aa16.48■□□□□ 0.23
COPS7A-221ENST00000546229 CLEC11AQ9Y240 323 aa16.48■□□□□ 0.23
COPS7A-221ENST00000546229 YDJCA8MPS7 323 aa16.47■□□□□ 0.23
COPS7A-221ENST00000546229 TRAF5O00463 557 aa16.47■□□□□ 0.23
COPS7A-221ENST00000546229 HOXB7P09629 217 aa16.47■□□□□ 0.23
COPS7A-221ENST00000546229 HSP90AB3PQ58FF7 597 aa16.47■□□□□ 0.23
COPS7A-221ENST00000546229 SP8Q8IXZ3 490 aa16.47■□□□□ 0.23
COPS7A-221ENST00000546229 SH3TC1Q8TE82 1336 aa16.46■□□□□ 0.23
COPS7A-221ENST00000546229 CDHR2Q9BYE9 1310 aa16.46■□□□□ 0.23
COPS7A-221ENST00000546229 WDR33Q9C0J8 1336 aaKnown RBP16.46■□□□□ 0.23
COPS7A-221ENST00000546229 SCN9AQ15858 1988 aa16.46■□□□□ 0.23
COPS7A-221ENST00000546229 BBOX1O75936 387 aa16.46■□□□□ 0.23
COPS7A-221ENST00000546229 HSPA8P11142 646 aaKnown RBP16.46■□□□□ 0.23
COPS7A-221ENST00000546229 LMOD1P29536 600 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms