RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 LARP6Q9BRS8 491 aaKnown RBP20.91■□□□□ 0.94
SFSWAP-203ENST00000535236 SLC26A6Q9BXS9 759 aa20.91■□□□□ 0.94
SFSWAP-203ENST00000535236 PUF60Q9UHX1 559 aaKnown RBP20.91■□□□□ 0.94
SFSWAP-203ENST00000535236 ZSCAN30Q86W11 494 aa20.91■□□□□ 0.94
SFSWAP-203ENST00000535236 BICD1Q96G01 975 aa20.91■□□□□ 0.94
SFSWAP-203ENST00000535236 NEK1Q96PY6 1258 aa20.91■□□□□ 0.94
SFSWAP-203ENST00000535236 SMC1AQ14683 1233 aaKnown RBP20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 ADGRF5Q8IZF2 1346 aa20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 TBCAO75347 108 aaKnown RBP20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 PI4KAP2A4QPH2 592 aa20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 BIN1O00499 593 aa20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 KANK3Q6NY19 840 aa20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 PI4KAP1Q8N8J0 262 aa20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 CAMSAP2Q08AD1 1489 aa20.9■□□□□ 0.94
SFSWAP-203ENST00000535236 CCDC174Q6PII3 467 aa20.89■□□□□ 0.94
SFSWAP-203ENST00000535236 NAA15Q9BXJ9 866 aaKnown RBP20.89■□□□□ 0.94
SFSWAP-203ENST00000535236 CADPS2Q86UW7 1296 aa20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 PANK2Q9BZ23 570 aa20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 FERMT1Q9BQL6 677 aa20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 HMG20BQ9P0W2 317 aa20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 BCCIPQ9P287 314 aaKnown RBP eCLIP20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 IDI1Q13907 227 aa20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 CHRNA2Q15822 529 aa20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 STX1AQ16623 288 aa20.89■□□□□ 0.93
SFSWAP-203ENST00000535236 TRIM27P14373 513 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 HDAC9Q9UKV0 1011 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 UBE4AQ14139 1066 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 ERMNQ8TAM6 284 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 TFIP11Q9UBB9 837 aaKnown RBP20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 RAB11FIP4Q86YS3 637 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 STX8Q9UNK0 236 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 NSD2O96028 1365 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 NF2P35240 595 aa20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 PRPF4BQ13523 1007 aaKnown RBP20.88■□□□□ 0.93
SFSWAP-203ENST00000535236 ERICH4A6NGS2 130 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 TSPY3P0CV98 308 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 TSPY8P0CW00 308 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 SSFA2P28290 1259 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 PRXQ9BXM0 1461 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 NOP2P46087 812 aaKnown RBP20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 SPECC1Q5M775 1068 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 C20orf194Q5TEA3 1177 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 ANKRD13DQ6ZTN6 518 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 TMX1Q9H3N1 280 aa20.87■□□□□ 0.93
SFSWAP-203ENST00000535236 PABPN1LA6NDY0 278 aaKnown RBP20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 STX6O43752 255 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 NBPF7P0C2Y1 421 aaPredicted RBP20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 HLTFQ14527 1009 aaKnown RBP eCLIP20.86■□□□□ 0.933e-7■■■■■ 26.9
SFSWAP-203ENST00000535236 TMC6Q7Z403 805 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 JARID2Q92833 1246 aaPredicted RBP20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 GSDMDP57764 484 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 TRAF1Q13077 416 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 NEMFO60524 1076 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 WTAPQ15007 396 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 ZGPATQ8N5A5 531 aaKnown RBP20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 MCM5P33992 734 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 CCDC102BQ68D86 513 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 KRT23Q9C075 422 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 EXOC1Q9NV70 894 aa20.86■□□□□ 0.93
SFSWAP-203ENST00000535236 WDR97A6NE52 1622 aa20.85■□□□□ 0.93
SFSWAP-203ENST00000535236 PPP4R3BQ5MIZ7 849 aa20.85■□□□□ 0.93
SFSWAP-203ENST00000535236 SETDB2Q96T68 719 aa20.85■□□□□ 0.93
SFSWAP-203ENST00000535236 MBIPQ9NS73 344 aa20.85■□□□□ 0.93
SFSWAP-203ENST00000535236 ACEP12821 1306 aa20.85■□□□□ 0.93
SFSWAP-203ENST00000535236 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.84■□□□□ 0.93
SFSWAP-203ENST00000535236 CYP7A1P22680 504 aa20.84■□□□□ 0.93
SFSWAP-203ENST00000535236 ACTN2P35609 894 aa20.84■□□□□ 0.93
SFSWAP-203ENST00000535236 TRMT1Q9NXH9 659 aaKnown RBP20.84■□□□□ 0.93
SFSWAP-203ENST00000535236 MMRN2Q9H8L6 949 aa20.84■□□□□ 0.93
SFSWAP-203ENST00000535236 KIF14Q15058 1648 aa20.84■□□□□ 0.93
SFSWAP-203ENST00000535236 IL27Q8NEV9 243 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 RMND1Q9NWS8 449 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 CA8P35219 290 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 ATP6V1AP38606 617 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 PSMD1Q99460 953 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 HOMER2Q9NSB8 354 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 TOP2BQ02880 1626 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 NOS1P29475 1434 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 CCDC172P0C7W6 258 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 TRIM47Q96LD4 638 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 USP25Q9UHP3 1055 aa20.83■□□□□ 0.93
SFSWAP-203ENST00000535236 ZCRB1Q8TBF4 217 aaKnown RBP20.83■□□□□ 0.92
SFSWAP-203ENST00000535236 NCOA1Q15788 1441 aa20.83■□□□□ 0.92
SFSWAP-203ENST00000535236 FAM83GA6ND36 823 aa20.83■□□□□ 0.92
SFSWAP-203ENST00000535236 GRIPAP1Q4V328 841 aa20.83■□□□□ 0.92
SFSWAP-203ENST00000535236 FSD2A1L4K1 749 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 OGFOD1Q8N543 542 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 SLC4A4Q9Y6R1 1079 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 ZFYP08048 801 aaPredicted RBP20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 IFIT1BQ5T764 474 aaKnown RBP20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 TBC1D9Q6ZT07 1266 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 TSNARE1Q96NA8 513 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 MSH6P52701 1360 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 DNMBPQ6XZF7 1577 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 CC2D2AQ9P2K1 1620 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 F8W031 263 aaPredicted RBP20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 USP37Q86T82 979 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 KLF18A0A0U1RQI7 1052 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 PPFIA3O75145 1194 aa20.82■□□□□ 0.92
SFSWAP-203ENST00000535236 LMAN1P49257 510 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms