RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 DCAF8L2P0C7V8 631 aa31.59■■■□□ 2.65
SFSWAP-203ENST00000535236 SUPT5HO00267 1087 aaKnown RBP29.69■■■□□ 2.34
SFSWAP-203ENST00000535236 EHMT2Q96KQ7 1210 aa29.03■■■□□ 2.24
SFSWAP-203ENST00000535236 SHROOM4Q9ULL8 1493 aa29.01■■■□□ 2.23
SFSWAP-203ENST00000535236 NISCHQ9Y2I1 1504 aa28.84■■■□□ 2.21
SFSWAP-203ENST00000535236 PELP1Q8IZL8 1130 aaKnown RBP28.78■■■□□ 2.2
SFSWAP-203ENST00000535236 APLP2Q06481 763 aa28.71■■■□□ 2.19
SFSWAP-203ENST00000535236 FAM9AQ8IZU1 332 aaPredicted RBP28.48■■■□□ 2.15
SFSWAP-203ENST00000535236 TTBK1Q5TCY1 1321 aaPredicted RBP28.05■■■□□ 2.08
SFSWAP-203ENST00000535236 RANGAP1P46060 587 aaPredicted RBP27.83■■■□□ 2.05
SFSWAP-203ENST00000535236 ATP1B4Q9UN42 357 aaPredicted RBP27.73■■■□□ 2.03
SFSWAP-203ENST00000535236 PCGF6Q9BYE7 350 aa27.72■■■□□ 2.03
SFSWAP-203ENST00000535236 ERICH6Q7L0X2 663 aa27.62■■■□□ 2.01
SFSWAP-203ENST00000535236 CCER1Q8TC90 406 aaPredicted RBP27.53■■■□□ 2
SFSWAP-203ENST00000535236 TRIM41Q8WV44 630 aa27.49■■□□□ 1.99
SFSWAP-203ENST00000535236 CENPBP07199 599 aaPredicted RBP27.47■■□□□ 1.99
SFSWAP-203ENST00000535236 UBTFP17480 764 aaKnown RBP27.36■■□□□ 1.97
SFSWAP-203ENST00000535236 ZEB1P37275 1124 aaPredicted RBP27.35■■□□□ 1.97
SFSWAP-203ENST00000535236 NEFLP07196 543 aa27.13■■□□□ 1.93
SFSWAP-203ENST00000535236 YTHDC1Q96MU7 727 aaKnown RBP26.9■■□□□ 1.9
SFSWAP-203ENST00000535236 MYT1LQ9UL68 1186 aa26.9■■□□□ 1.9
SFSWAP-203ENST00000535236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.76■■□□□ 1.87
SFSWAP-203ENST00000535236 HNRNPUL2Q1KMD3 747 aaKnown RBP26.76■■□□□ 1.87
SFSWAP-203ENST00000535236 PPARGC1BQ86YN6 1023 aaKnown RBP26.72■■□□□ 1.87
SFSWAP-203ENST00000535236 POLR3GLQ9BT43 218 aa26.63■■□□□ 1.85
SFSWAP-203ENST00000535236 ITGAEP38570 1179 aa26.58■■□□□ 1.85
SFSWAP-203ENST00000535236 DAXXQ9UER7 740 aaPredicted RBP26.52■■□□□ 1.84
SFSWAP-203ENST00000535236 TRIM26Q12899 539 aaPredicted RBP26.38■■□□□ 1.81
SFSWAP-203ENST00000535236 CHIC1Q5VXU3 224 aa26.37■■□□□ 1.81
SFSWAP-203ENST00000535236 CNGB1Q14028 1251 aaPredicted RBP26.3■■□□□ 1.8
SFSWAP-203ENST00000535236 SLC4A1APQ9BWU0 796 aaKnown RBP26.28■■□□□ 1.8
SFSWAP-203ENST00000535236 MYT1Q01538 1121 aa26.21■■□□□ 1.79
SFSWAP-203ENST00000535236 HRCP23327 699 aa26.04■■□□□ 1.76
SFSWAP-203ENST00000535236 LOC105371045A0A1W2PR82 267 aa25.97■■□□□ 1.75
SFSWAP-203ENST00000535236 CLSPNQ9HAW4 1339 aa25.94■■□□□ 1.74
SFSWAP-203ENST00000535236 FAM50AQ14320 339 aaKnown RBP25.87■■□□□ 1.73
SFSWAP-203ENST00000535236 ZNF316A6NFI3 1004 aaPredicted RBP25.85■■□□□ 1.73
SFSWAP-203ENST00000535236 TRIM52Q96A61 297 aa25.83■■□□□ 1.73
SFSWAP-203ENST00000535236 RTL5Q5HYW3 569 aaPredicted RBP25.7■■□□□ 1.71
SFSWAP-203ENST00000535236 NEUROD1Q13562 356 aa25.61■■□□□ 1.69
SFSWAP-203ENST00000535236 PABPN1Q86U42 306 aaKnown RBP eCLIP25.59■■□□□ 1.694e-7■■□□□ 14.5
SFSWAP-203ENST00000535236 DIEXFQ68CQ4 756 aaKnown RBP25.57■■□□□ 1.68
SFSWAP-203ENST00000535236 ZNF326Q5BKZ1 582 aaKnown RBP25.56■■□□□ 1.68
SFSWAP-203ENST00000535236 ZBTB47Q9UFB7 747 aaPredicted RBP25.55■■□□□ 1.68
SFSWAP-203ENST00000535236 FBLN2P98095 1184 aa25.55■■□□□ 1.68
SFSWAP-203ENST00000535236 SLC24A1O60721 1099 aa25.45■■□□□ 1.66
SFSWAP-203ENST00000535236 BCANQ96GW7 911 aa25.42■■□□□ 1.66
SFSWAP-203ENST00000535236 ABCC9O60706 1549 aa25.41■■□□□ 1.66
SFSWAP-203ENST00000535236 ANP32CO43423 234 aa25.37■■□□□ 1.65
SFSWAP-203ENST00000535236 NEFMP07197 916 aa25.33■■□□□ 1.64
SFSWAP-203ENST00000535236 CANXP27824 592 aaKnown RBP25.31■■□□□ 1.64
SFSWAP-203ENST00000535236 BCL11AQ9H165 835 aa25.27■■□□□ 1.64
SFSWAP-203ENST00000535236 ARID3CA6NKF2 412 aa25.18■■□□□ 1.62
SFSWAP-203ENST00000535236 CDK11AQ9UQ88 783 aaPredicted RBP25.18■■□□□ 1.62
SFSWAP-203ENST00000535236 P3H3Q8IVL6 736 aa25.12■■□□□ 1.61
SFSWAP-203ENST00000535236 ZNF777Q9ULD5 760 aaPredicted RBP25.1■■□□□ 1.61
SFSWAP-203ENST00000535236 ESF1Q9H501 851 aaKnown RBP25.09■■□□□ 1.61
SFSWAP-203ENST00000535236 GTF3C3Q9Y5Q9 886 aa24.94■■□□□ 1.58
SFSWAP-203ENST00000535236 STAG3Q9UJ98 1225 aa24.93■■□□□ 1.58
SFSWAP-203ENST00000535236 CHGAP10645 457 aaKnown RBP24.89■■□□□ 1.57
SFSWAP-203ENST00000535236 PLPPR3Q6T4P5 718 aa24.86■■□□□ 1.57
SFSWAP-203ENST00000535236 CSRNP3Q8WYN3 585 aa24.84■■□□□ 1.57
SFSWAP-203ENST00000535236 ANP32AP39687 249 aaKnown RBP24.81■■□□□ 1.56
SFSWAP-203ENST00000535236 NPM1P06748 294 aaKnown RBP eCLIP24.8■■□□□ 1.56
SFSWAP-203ENST00000535236 NPM2Q86SE8 214 aaKnown RBP24.72■■□□□ 1.55
SFSWAP-203ENST00000535236 TONSLQ96HA7 1378 aa24.67■■□□□ 1.54
SFSWAP-203ENST00000535236 HSP90AA1P07900 732 aaKnown RBP24.67■■□□□ 1.54
SFSWAP-203ENST00000535236 ANP32BQ92688 251 aaKnown RBP24.62■■□□□ 1.53
SFSWAP-203ENST00000535236 UPF2Q9HAU5 1272 aaKnown RBP24.58■■□□□ 1.53
SFSWAP-203ENST00000535236 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.55■■□□□ 1.526e-7■■■□□ 16.9
SFSWAP-203ENST00000535236 FAM9BQ8IZU0 186 aa24.5■■□□□ 1.51
SFSWAP-203ENST00000535236 HNRNPUQ00839 825 aaKnown RBP eCLIP24.48■■□□□ 1.51
SFSWAP-203ENST00000535236 SALL2Q9Y467 1007 aaPredicted RBP24.47■■□□□ 1.51
SFSWAP-203ENST00000535236 SCAF1Q9H7N4 1312 aaKnown RBP24.47■■□□□ 1.51
SFSWAP-203ENST00000535236 ACIN1Q9UKV3 1341 aaKnown RBP24.46■■□□□ 1.51
SFSWAP-203ENST00000535236 CHIC2Q9UKJ5 165 aa24.45■■□□□ 1.51
SFSWAP-203ENST00000535236 FKBP8Q14318 412 aa24.45■■□□□ 1.5
SFSWAP-203ENST00000535236 WDR43Q15061 677 aaKnown RBP eCLIP24.4■■□□□ 1.57e-6■■■■■ 27.3
SFSWAP-203ENST00000535236 TSPY4P0CV99 314 aa24.4■■□□□ 1.5
SFSWAP-203ENST00000535236 TSPY10P0CW01 314 aa24.4■■□□□ 1.5
SFSWAP-203ENST00000535236 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.4■■□□□ 1.5
SFSWAP-203ENST00000535236 TMC1Q8TDI8 760 aa24.4■■□□□ 1.5
SFSWAP-203ENST00000535236 DDX10Q13206 875 aaKnown RBP24.39■■□□□ 1.5
SFSWAP-203ENST00000535236 A0A0G2JS52 829 aa24.37■■□□□ 1.49
SFSWAP-203ENST00000535236 SCRIBQ14160 1630 aa24.36■■□□□ 1.49
SFSWAP-203ENST00000535236 KDM2AQ9Y2K7 1162 aa24.34■■□□□ 1.49
SFSWAP-203ENST00000535236 CHMP7Q8WUX9 453 aaPredicted RBP24.28■■□□□ 1.48
SFSWAP-203ENST00000535236 CCDC136Q96JN2 1154 aa24.27■■□□□ 1.48
SFSWAP-203ENST00000535236 ZBTB7CA1YPR0 619 aa24.26■■□□□ 1.47
SFSWAP-203ENST00000535236 MYH16Q9H6N6 1097 aa24.24■■□□□ 1.47
SFSWAP-203ENST00000535236 MTUS2Q5JR59 1369 aa24.23■■□□□ 1.47
SFSWAP-203ENST00000535236 C14orf37Q86TY3 774 aa24.22■■□□□ 1.47
SFSWAP-203ENST00000535236 PPP1R15AO75807 674 aaPredicted RBP24.21■■□□□ 1.47
SFSWAP-203ENST00000535236 EIF5BO60841 1220 aaKnown RBP24.21■■□□□ 1.47
SFSWAP-203ENST00000535236 MRS2Q9HD23 443 aa24.2■■□□□ 1.47
SFSWAP-203ENST00000535236 PLEKHG5O94827 1062 aa24.2■■□□□ 1.46
SFSWAP-203ENST00000535236 CDK11BP21127 795 aaKnown RBP24.15■■□□□ 1.46
SFSWAP-203ENST00000535236 SENP3Q9H4L4 574 aaPredicted RBP24.14■■□□□ 1.46
SFSWAP-203ENST00000535236 KCNH8Q96L42 1107 aa24.09■■□□□ 1.45
SFSWAP-203ENST00000535236 ARXQ96QS3 562 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms