RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CCDC87Q9NVE4 849 aa5.49□□□□□ -1.53
CD44-229ENST00000528672 CELA2BP08218 269 aaPredicted RBP5.48□□□□□ -1.53
CD44-229ENST00000528672 GRNP28799 593 aaKnown RBP5.48□□□□□ -1.53
CD44-229ENST00000528672 MAP2K3P46734 347 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 ARHGAP4P98171 946 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 MAP3K10Q02779 954 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 DGKZQ13574 1117 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 GTPBP3Q969Y2 492 aaKnown RBP5.48□□□□□ -1.53
CD44-229ENST00000528672 COL26A1Q96A83 441 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 RUBCNLQ9H714 662 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 AVENQ9NQS1 362 aaPredicted RBP5.48□□□□□ -1.53
CD44-229ENST00000528672 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.48□□□□□ -1.53
CD44-229ENST00000528672 RNF19AQ9NV58 838 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 ANKIB1Q9P2G1 1089 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 GNEQ9Y223 722 aaKnown RBP5.48□□□□□ -1.53
CD44-229ENST00000528672 PCDHGC4Q9Y5F7 938 aa5.48□□□□□ -1.53
CD44-229ENST00000528672 A0A1W2PNR3 127 aa5.47□□□□□ -1.53
CD44-229ENST00000528672 ARID4AP29374 1257 aaPredicted RBP5.47□□□□□ -1.53
CD44-229ENST00000528672 RTN1Q16799 776 aa5.47□□□□□ -1.53
CD44-229ENST00000528672 ARSJQ5FYB0 599 aaPredicted RBP5.47□□□□□ -1.53
CD44-229ENST00000528672 IER5Q5VY09 327 aa5.47□□□□□ -1.53
CD44-229ENST00000528672 DCAF5Q96JK2 942 aa5.47□□□□□ -1.53
CD44-229ENST00000528672 ZIC5Q96T25 663 aa5.47□□□□□ -1.53
CD44-229ENST00000528672 SPOCK3Q9BQ16 436 aa5.47□□□□□ -1.53
CD44-229ENST00000528672 ENAMQ9NRM1 1142 aa5.47□□□□□ -1.53
CD44-229ENST00000528672 BIN2Q9UBW5 565 aaPredicted RBP5.47□□□□□ -1.53
CD44-229ENST00000528672 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.47□□□□□ -1.53
CD44-229ENST00000528672 PHF20L1A8MW92 1017 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 EFSO43281 561 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 ICMTO60725 284 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 ITGB2P05107 769 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 MX2P20592 715 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 MYO19Q96H55 970 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 SETDB2Q96T68 719 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 CNTNAP5Q8WYK1 1306 aa5.46□□□□□ -1.54
CD44-229ENST00000528672 ATXN7O15265 892 aaPredicted RBP5.45□□□□□ -1.54
CD44-229ENST00000528672 RBM25P49756 843 aaKnown RBP5.45□□□□□ -1.54
CD44-229ENST00000528672 KCNQ4P56696 695 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 LRRC69Q6ZNQ3 347 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 BICDL1Q6ZP65 573 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 SND1Q7KZF4 910 aaKnown RBP eCLIP5.45□□□□□ -1.54
CD44-229ENST00000528672 BEND7Q8N7W2 519 aaPredicted RBP5.45□□□□□ -1.54
CD44-229ENST00000528672 RHPN1Q8TCX5 695 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 KRTAP4-8Q9BYQ9 185 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 ZCCHC2Q9C0B9 1178 aaKnown RBP5.45□□□□□ -1.54
CD44-229ENST00000528672 EFCC1Q9HA90 598 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 C11orf16Q9NQ32 467 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 GDF2Q9UK05 429 aaPredicted RBP5.45□□□□□ -1.54
CD44-229ENST00000528672 GJA3Q9Y6H8 435 aa5.45□□□□□ -1.54
CD44-229ENST00000528672 IGF1RP08069 1367 aa5.44□□□□□ -1.54
CD44-229ENST00000528672 BNIP3LO60238 219 aa5.44□□□□□ -1.54
CD44-229ENST00000528672 FZD6O60353 706 aa5.44□□□□□ -1.54
CD44-229ENST00000528672 FGFR3P22607 806 aa5.44□□□□□ -1.54
CD44-229ENST00000528672 TNP2Q05952 138 aa5.44□□□□□ -1.54
CD44-229ENST00000528672 C16orf46Q6P387 395 aa5.44□□□□□ -1.54
CD44-229ENST00000528672 CCER1Q8TC90 406 aaPredicted RBP5.44□□□□□ -1.54
CD44-229ENST00000528672 GPR25O00155 361 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 OPLAHO14841 1288 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 PROCP04070 461 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 ARAFP10398 606 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 EIF1AXP47813 144 aaKnown RBP5.43□□□□□ -1.54
CD44-229ENST00000528672 CCDC27Q2M243 656 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 GOLGA6L1Q8N7Z2 621 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 HELQQ8TDG4 1101 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 VTI1AQ96AJ9 217 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 ABHD17AQ96GS6 310 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 SUSD3Q96L08 255 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 GGNBP2Q9H3C7 697 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 NEUROD4Q9HD90 331 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 STRN4Q9NRL3 753 aa5.43□□□□□ -1.54
CD44-229ENST00000528672 DMGDHQ9UI17 866 aaKnown RBP5.43□□□□□ -1.54
CD44-229ENST00000528672 TGFBR3LH3BV60 316 aa5.42□□□□□ -1.54
CD44-229ENST00000528672 PTCD1O75127 700 aaKnown RBP5.42□□□□□ -1.54
CD44-229ENST00000528672 MAPTP10636 758 aaKnown RBP5.42□□□□□ -1.54
CD44-229ENST00000528672 FKBP4Q02790 459 aaKnown RBP eCLIP5.42□□□□□ -1.54
CD44-229ENST00000528672 DNAJC14Q6Y2X3 702 aaPredicted RBP5.42□□□□□ -1.54
CD44-229ENST00000528672 SLCO4C1Q6ZQN7 724 aa5.42□□□□□ -1.54
CD44-229ENST00000528672 GLYCTKQ8IVS8 523 aa5.42□□□□□ -1.54
CD44-229ENST00000528672 IFT43Q96FT9 208 aa5.42□□□□□ -1.54
CD44-229ENST00000528672 OXCT2Q9BYC2 517 aaPredicted RBP5.42□□□□□ -1.54
CD44-229ENST00000528672 BCRP11274 1271 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 BMP4P12644 408 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 TYRO3Q06418 890 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 TRIP4Q15650 581 aaPredicted RBP5.41□□□□□ -1.54
CD44-229ENST00000528672 ZNF468Q5VIY5 522 aaPredicted RBP5.41□□□□□ -1.54
CD44-229ENST00000528672 B4GALNT3Q6L9W6 998 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 PODNQ7Z5L7 613 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 RAB44Q7Z6P3 723 aaPredicted RBP5.41□□□□□ -1.54
CD44-229ENST00000528672 TREML1Q86YW5 311 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 GPR152Q8TDT2 470 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 EDEM1Q92611 657 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 MARK1Q9P0L2 795 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 POLIQ9UNA4 740 aa5.41□□□□□ -1.54
CD44-229ENST00000528672 DCDC2BA2VCK2 349 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 E9PSI1 815 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 K7ELQ4 463 aaPredicted RBP5.4□□□□□ -1.54
CD44-229ENST00000528672 IGHA2P01877 340 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 EPB42P16452 691 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 ADH6P28332 368 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 ZAP70P43403 619 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms