RNA–Protein interactions for RNA: ENST00000485124.1

TMEM40-208, Transcript of transmembrane protein 40, humanhuman

TSL 5

Gene TMEM40, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM40-208ENST00000485124 LRP10Q7Z4F1 713 aa12.96□□□□□ -0.33
TMEM40-208ENST00000485124 PPP1R42Q7Z4L9 355 aa12.96□□□□□ -0.33
TMEM40-208ENST00000485124 GPC2Q8N158 579 aa12.96□□□□□ -0.33
TMEM40-208ENST00000485124 CRAMP1Q96RY5 1269 aa12.96□□□□□ -0.33
TMEM40-208ENST00000485124 THUMPD2Q9BTF0 503 aaKnown RBP12.96□□□□□ -0.33
TMEM40-208ENST00000485124 ZNF277Q9NRM2 450 aaPredicted RBP12.96□□□□□ -0.33
TMEM40-208ENST00000485124 TSPYL4Q9UJ04 414 aa12.96□□□□□ -0.33
TMEM40-208ENST00000485124 PASKQ96RG2 1323 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 NTSR2O95665 410 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 MYL6BP14649 208 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 RIPK4P57078 832 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 PNMA8AQ86V59 439 aaPredicted RBP12.95□□□□□ -0.34
TMEM40-208ENST00000485124 NUTM1Q86Y26 1132 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 SYNE4Q8N205 404 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 NGEFQ8N5V2 710 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 JDP2Q8WYK2 163 aa12.95□□□□□ -0.34
TMEM40-208ENST00000485124 RPGRQ92834 1020 aaKnown RBP12.95□□□□□ -0.34
TMEM40-208ENST00000485124 ZNF541Q9H0D2 1346 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 TMPOP42166 694 aaKnown RBP12.94□□□□□ -0.34
TMEM40-208ENST00000485124 PDIA6Q15084 440 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 HSP90AB3PQ58FF7 597 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 SLC10A5Q5PT55 438 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 SUSD4Q5VX71 490 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 RBM17Q96I25 401 aaKnown RBP12.94□□□□□ -0.34
TMEM40-208ENST00000485124 VPS33BQ9H267 617 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 ZBTB3Q9H5J0 574 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 HACL1Q9UJ83 578 aa12.94□□□□□ -0.34
TMEM40-208ENST00000485124 MYBBP1AQ9BQG0 1328 aaKnown RBP12.93□□□□□ -0.34
TMEM40-208ENST00000485124 POTEIP0CG38 1075 aa12.93□□□□□ -0.34
TMEM40-208ENST00000485124 POTEJP0CG39 1038 aa12.93□□□□□ -0.34
TMEM40-208ENST00000485124 GPTP24298 496 aa12.93□□□□□ -0.34
TMEM40-208ENST00000485124 CCDC184Q52MB2 194 aa12.93□□□□□ -0.34
TMEM40-208ENST00000485124 OLFM4Q6UX06 510 aa12.93□□□□□ -0.34
TMEM40-208ENST00000485124 NLRP3Q96P20 1036 aa12.93□□□□□ -0.34
TMEM40-208ENST00000485124 SUPT16HQ9Y5B9 1047 aaKnown RBP12.93□□□□□ -0.34
TMEM40-208ENST00000485124 LAMB2P55268 1798 aa12.92□□□□□ -0.34
TMEM40-208ENST00000485124 EPHX2P34913 555 aa12.92□□□□□ -0.34
TMEM40-208ENST00000485124 CNTNAP1P78357 1384 aa12.92□□□□□ -0.34
TMEM40-208ENST00000485124 PPEF1O14829 653 aaPredicted RBP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 ITGBL1O95965 494 aaPredicted RBP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 HOXB7P09629 217 aa12.91□□□□□ -0.34
TMEM40-208ENST00000485124 HSPA1AP0DMV8 641 aaKnown RBP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 HSPA1BP0DMV9 641 aaKnown RBP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 EIF6P56537 245 aaKnown RBP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 COL13A1Q5TAT6 717 aaPredicted RBP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 UTP14AQ9BVJ6 771 aaKnown RBP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 DDX21Q9NR30 783 aaKnown RBP eCLIP12.91□□□□□ -0.34
TMEM40-208ENST00000485124 COL4A5P29400 1685 aa12.9□□□□□ -0.34
TMEM40-208ENST00000485124 TMEM88BA6NKF7 163 aa12.9□□□□□ -0.34
TMEM40-208ENST00000485124 CHL1O00533 1208 aa12.9□□□□□ -0.34
TMEM40-208ENST00000485124 EIF2S2P20042 333 aaKnown RBP12.9□□□□□ -0.34
TMEM40-208ENST00000485124 RUNDC1Q96C34 613 aa12.9□□□□□ -0.34
TMEM40-208ENST00000485124 TMX4Q9H1E5 349 aaPredicted RBP12.9□□□□□ -0.34
TMEM40-208ENST00000485124 ATP6V0A2Q9Y487 856 aa12.9□□□□□ -0.34
TMEM40-208ENST00000485124 BBOX1O75936 387 aa12.89□□□□□ -0.35
TMEM40-208ENST00000485124 LARGE2Q8N3Y3 721 aa12.89□□□□□ -0.35
TMEM40-208ENST00000485124 SUPT20HQ8NEM7 779 aa12.89□□□□□ -0.35
TMEM40-208ENST00000485124 RTFDC1Q9BY42 306 aaPredicted RBP12.89□□□□□ -0.35
TMEM40-208ENST00000485124 LRRC37AA6NMS7 1700 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 LTBP1Q14766 1721 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 LMOD1P29536 600 aaPredicted RBP12.88□□□□□ -0.35
TMEM40-208ENST00000485124 TCIRG1Q13488 830 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 PROSER3Q2NL68 480 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 EAPPQ56P03 285 aaPredicted RBP12.88□□□□□ -0.35
TMEM40-208ENST00000485124 COPS6Q7L5N1 327 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 TMC4Q7Z404 712 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 NLRP10Q86W26 655 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 TRPM7Q96QT4 1865 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 ABCC4O15439 1325 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 SH3TC1Q8TE82 1336 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 CDHR2Q9BYE9 1310 aa12.88□□□□□ -0.35
TMEM40-208ENST00000485124 SCNN1DP51172 638 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 WDR43Q15061 677 aaKnown RBP eCLIP12.87□□□□□ -0.35
TMEM40-208ENST00000485124 C3orf67Q6ZVT6 689 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 USP50Q70EL3 339 aaPredicted RBP12.87□□□□□ -0.35
TMEM40-208ENST00000485124 NIM1KQ8IY84 436 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 TNS4Q8IZW8 715 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 CNTROBQ8N137 903 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 XAGE3Q8WTP9 111 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 MKRN1Q9UHC7 482 aaKnown RBP12.87□□□□□ -0.35
TMEM40-208ENST00000485124 TRIM35Q9UPQ4 493 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 CLEC11AQ9Y240 323 aa12.87□□□□□ -0.35
TMEM40-208ENST00000485124 DDX60Q8IY21 1712 aaKnown RBP12.87□□□□□ -0.35
TMEM40-208ENST00000485124 RASSF10A6NK89 507 aa12.86□□□□□ -0.35
TMEM40-208ENST00000485124 SP8Q8IXZ3 490 aa12.86□□□□□ -0.35
TMEM40-208ENST00000485124 PLBD2Q8NHP8 589 aa12.86□□□□□ -0.35
TMEM40-208ENST00000485124 CFAP44Q96MT7 982 aa12.86□□□□□ -0.35
TMEM40-208ENST00000485124 MRS2Q9HD23 443 aa12.86□□□□□ -0.35
TMEM40-208ENST00000485124 DBF4Q9UBU7 674 aaPredicted RBP12.86□□□□□ -0.35
TMEM40-208ENST00000485124 PPIP5K2O43314 1243 aa12.85□□□□□ -0.35
TMEM40-208ENST00000485124 ANXA1P04083 346 aa12.85□□□□□ -0.35
TMEM40-208ENST00000485124 HNRNPUQ00839 825 aaKnown RBP eCLIP12.85□□□□□ -0.35
TMEM40-208ENST00000485124 GRAPQ13588 217 aa12.85□□□□□ -0.35
TMEM40-208ENST00000485124 DDX46Q7L014 1031 aaKnown RBP12.85□□□□□ -0.35
TMEM40-208ENST00000485124 GRAPLQ8TC17 118 aaPredicted RBP12.85□□□□□ -0.35
TMEM40-208ENST00000485124 TRMT112Q9UI30 125 aaKnown RBP12.85□□□□□ -0.35
TMEM40-208ENST00000485124 ZNRF3Q9ULT6 936 aa12.85□□□□□ -0.35
TMEM40-208ENST00000485124 GJA3Q9Y6H8 435 aa12.85□□□□□ -0.35
TMEM40-208ENST00000485124 THSD7BQ9C0I4 1608 aa12.84□□□□□ -0.35
TMEM40-208ENST00000485124 KIAA2012Q0VF49 1180 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms