RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 PSMD1Q99460 953 aa17.41■□□□□ 0.38
VCL-205ENST00000478896 CLEC11AQ9Y240 323 aa17.41■□□□□ 0.38
VCL-205ENST00000478896 EPHX2P34913 555 aa17.4■□□□□ 0.38
VCL-205ENST00000478896 LMOD3Q0VAK6 560 aa17.4■□□□□ 0.38
VCL-205ENST00000478896 CC2D2BQ6DHV5 1058 aa17.4■□□□□ 0.38
VCL-205ENST00000478896 TNS4Q8IZW8 715 aa17.4■□□□□ 0.38
VCL-205ENST00000478896 RBM17Q96I25 401 aaKnown RBP17.4■□□□□ 0.38
VCL-205ENST00000478896 ANKRD36CQ5JPF3 1778 aa17.39■□□□□ 0.37
VCL-205ENST00000478896 FZD9O00144 591 aa17.39■□□□□ 0.37
VCL-205ENST00000478896 TCERG1O14776 1098 aaKnown RBP17.39■□□□□ 0.37
VCL-205ENST00000478896 PPEF1O14829 653 aaPredicted RBP17.39■□□□□ 0.37
VCL-205ENST00000478896 NTSR2O95665 410 aa17.39■□□□□ 0.37
VCL-205ENST00000478896 EIF6P56537 245 aaKnown RBP17.39■□□□□ 0.37
VCL-205ENST00000478896 RALBP1Q15311 655 aa17.39■□□□□ 0.37
VCL-205ENST00000478896 PARP10Q53GL7 1025 aa17.39■□□□□ 0.37
VCL-205ENST00000478896 ZNF34Q8IZ26 560 aa17.39■□□□□ 0.37
VCL-205ENST00000478896 TMX4Q9H1E5 349 aaPredicted RBP17.39■□□□□ 0.37
VCL-205ENST00000478896 SNED1Q8TER0 1413 aa17.38■□□□□ 0.37
VCL-205ENST00000478896 PNMA8AQ86V59 439 aaPredicted RBP17.38■□□□□ 0.37
VCL-205ENST00000478896 GPC2Q8N158 579 aa17.38■□□□□ 0.37
VCL-205ENST00000478896 PASKQ96RG2 1323 aa17.38■□□□□ 0.37
VCL-205ENST00000478896 ADAMTSL1Q8N6G6 1762 aa17.38■□□□□ 0.37
VCL-205ENST00000478896 CAPN15O75808 1086 aa17.37■□□□□ 0.37
VCL-205ENST00000478896 HOXA10P31260 410 aaPredicted RBP17.37■□□□□ 0.37
VCL-205ENST00000478896 GRIPAP1Q4V328 841 aa17.37■□□□□ 0.37
VCL-205ENST00000478896 LARGE2Q8N3Y3 721 aa17.37■□□□□ 0.37
VCL-205ENST00000478896 NLRP3Q96P20 1036 aa17.37■□□□□ 0.37
VCL-205ENST00000478896 GJA3Q9Y6H8 435 aa17.37■□□□□ 0.37
VCL-205ENST00000478896 CNTNAP1P78357 1384 aa17.37■□□□□ 0.37
VCL-205ENST00000478896 TMEM88BA6NKF7 163 aa17.36■□□□□ 0.37
VCL-205ENST00000478896 ANXA1P04083 346 aa17.36■□□□□ 0.37
VCL-205ENST00000478896 LMOD1P29536 600 aaPredicted RBP17.36■□□□□ 0.37
VCL-205ENST00000478896 TMPOP42166 694 aaKnown RBP17.36■□□□□ 0.37
VCL-205ENST00000478896 NECTIN2Q92692 538 aa17.36■□□□□ 0.37
VCL-205ENST00000478896 CRAMP1Q96RY5 1269 aa17.36■□□□□ 0.37
VCL-205ENST00000478896 UTP14AQ9BVJ6 771 aaKnown RBP17.36■□□□□ 0.37
VCL-205ENST00000478896 BABAM1Q9NWV8 329 aa17.36■□□□□ 0.37
VCL-205ENST00000478896 COL4A5P29400 1685 aa17.36■□□□□ 0.37
VCL-205ENST00000478896 AIMP1Q12904 312 aaKnown RBP17.35■□□□□ 0.37
VCL-205ENST00000478896 NEUROD2Q15784 382 aa17.35■□□□□ 0.37
VCL-205ENST00000478896 PROSER3Q2NL68 480 aa17.35■□□□□ 0.37
VCL-205ENST00000478896 LAMB2P55268 1798 aa17.34■□□□□ 0.37
VCL-205ENST00000478896 PDIA6Q15084 440 aa17.34■□□□□ 0.37
VCL-205ENST00000478896 HSP90AB3PQ58FF7 597 aa17.34■□□□□ 0.37
VCL-205ENST00000478896 MAP1SQ66K74 1059 aaPredicted RBP17.34■□□□□ 0.37
VCL-205ENST00000478896 C3orf67Q6ZVT6 689 aa17.34■□□□□ 0.37
VCL-205ENST00000478896 LRP10Q7Z4F1 713 aa17.34■□□□□ 0.37
VCL-205ENST00000478896 NIM1KQ8IY84 436 aa17.34■□□□□ 0.37
VCL-205ENST00000478896 CCDC146Q8IYE0 955 aa17.34■□□□□ 0.37
VCL-205ENST00000478896 MYBBP1AQ9BQG0 1328 aaKnown RBP17.34■□□□□ 0.37
VCL-205ENST00000478896 PPIP5K2O43314 1243 aa17.33■□□□□ 0.36
VCL-205ENST00000478896 ITGBL1O95965 494 aaPredicted RBP17.33■□□□□ 0.36
VCL-205ENST00000478896 SLC51AQ86UW1 340 aa17.33■□□□□ 0.36
VCL-205ENST00000478896 CNTROBQ8N137 903 aa17.33■□□□□ 0.36
VCL-205ENST00000478896 LAS1LQ9Y4W2 734 aaKnown RBP17.33■□□□□ 0.36
VCL-205ENST00000478896 LTBP1Q14766 1721 aa17.33■□□□□ 0.36
VCL-205ENST00000478896 ABCC4O15439 1325 aa17.32■□□□□ 0.36
VCL-205ENST00000478896 WDR43Q15061 677 aaKnown RBP eCLIP17.32■□□□□ 0.36
VCL-205ENST00000478896 COPS6Q7L5N1 327 aa17.32■□□□□ 0.36
VCL-205ENST00000478896 XAGE3Q8WTP9 111 aa17.32■□□□□ 0.36
VCL-205ENST00000478896 DDX10Q13206 875 aaKnown RBP17.31■□□□□ 0.36
VCL-205ENST00000478896 AOC3Q16853 763 aa17.31■□□□□ 0.36
VCL-205ENST00000478896 AIDAQ96BJ3 306 aa17.31■□□□□ 0.36
VCL-205ENST00000478896 ATP6V0A2Q9Y487 856 aa17.31■□□□□ 0.36
VCL-205ENST00000478896 SUPT20HQ8NEM7 779 aa17.3■□□□□ 0.36
VCL-205ENST00000478896 ABT1Q9ULW3 272 aaKnown RBP17.3■□□□□ 0.36
VCL-205ENST00000478896 PCNTO95613 3336 aa17.3■□□□□ 0.36
VCL-205ENST00000478896 VEGFBP49765 207 aa17.29■□□□□ 0.36
VCL-205ENST00000478896 SCNN1DP51172 638 aa17.29■□□□□ 0.36
VCL-205ENST00000478896 KRT24Q2M2I5 525 aa17.29■□□□□ 0.36
VCL-205ENST00000478896 SLC10A5Q5PT55 438 aa17.29■□□□□ 0.36
VCL-205ENST00000478896 NLRP10Q86W26 655 aa17.29■□□□□ 0.36
VCL-205ENST00000478896 RUNDC1Q96C34 613 aa17.29■□□□□ 0.36
VCL-205ENST00000478896 DDX21Q9NR30 783 aaKnown RBP eCLIP17.29■□□□□ 0.36
VCL-205ENST00000478896 TRMT112Q9UI30 125 aaKnown RBP17.29■□□□□ 0.36
VCL-205ENST00000478896 SH3TC1Q8TE82 1336 aa17.28■□□□□ 0.36
VCL-205ENST00000478896 FOXN1O15353 648 aa17.28■□□□□ 0.36
VCL-205ENST00000478896 HCLS1P14317 486 aaPredicted RBP17.28■□□□□ 0.36
VCL-205ENST00000478896 EPS15P42566 896 aa17.28■□□□□ 0.36
VCL-205ENST00000478896 TCIRG1Q13488 830 aa17.28■□□□□ 0.36
VCL-205ENST00000478896 HDGFL1Q5TGJ6 251 aa17.28■□□□□ 0.36
VCL-205ENST00000478896 DPP8Q6V1X1 898 aaPredicted RBP17.28■□□□□ 0.36
VCL-205ENST00000478896 DDX46Q7L014 1031 aaKnown RBP17.28■□□□□ 0.36
VCL-205ENST00000478896 CHPF2Q9P2E5 772 aa17.28■□□□□ 0.36
VCL-205ENST00000478896 DEFB115Q30KQ5 88 aa17.27■□□□□ 0.36
VCL-205ENST00000478896 MPNDQ8N594 471 aa17.27■□□□□ 0.36
VCL-205ENST00000478896 VPS33BQ9H267 617 aa17.27■□□□□ 0.36
VCL-205ENST00000478896 TAF1P21675 1872 aa17.27■□□□□ 0.35
VCL-205ENST00000478896 TRPM7Q96QT4 1865 aa17.27■□□□□ 0.35
VCL-205ENST00000478896 CHL1O00533 1208 aa17.26■□□□□ 0.35
VCL-205ENST00000478896 BBOX1O75936 387 aa17.26■□□□□ 0.35
VCL-205ENST00000478896 GRAPQ13588 217 aa17.26■□□□□ 0.35
VCL-205ENST00000478896 PAXIP1Q6ZW49 1069 aaPredicted RBP17.26■□□□□ 0.35
VCL-205ENST00000478896 USP50Q70EL3 339 aaPredicted RBP17.26■□□□□ 0.35
VCL-205ENST00000478896 SP8Q8IXZ3 490 aa17.26■□□□□ 0.35
VCL-205ENST00000478896 GRAPLQ8TC17 118 aaPredicted RBP17.26■□□□□ 0.35
VCL-205ENST00000478896 ZNF428Q96B54 188 aa17.26■□□□□ 0.35
VCL-205ENST00000478896 DDX60Q8IY21 1712 aaKnown RBP17.26■□□□□ 0.35
VCL-205ENST00000478896 RASSF10A6NK89 507 aa17.25■□□□□ 0.35
VCL-205ENST00000478896 ZNRF3Q9ULT6 936 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 148.4 ms