RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 HOXA10P31260 410 aaPredicted RBP21.17■□□□□ 0.98
COL7A1-204ENST00000462475 TMPOP42166 694 aaKnown RBP21.17■□□□□ 0.98
COL7A1-204ENST00000462475 LDHDQ86WU2 507 aa21.17■□□□□ 0.98
COL7A1-204ENST00000462475 PSMD1Q99460 953 aa21.17■□□□□ 0.98
COL7A1-204ENST00000462475 COL4A5P29400 1685 aa21.16■□□□□ 0.98
COL7A1-204ENST00000462475 FZD9O00144 591 aa21.16■□□□□ 0.98
COL7A1-204ENST00000462475 SCN4AP35499 1836 aa21.15■□□□□ 0.98
COL7A1-204ENST00000462475 CREBZFQ9NS37 354 aa21.15■□□□□ 0.98
COL7A1-204ENST00000462475 RNF123Q5XPI4 1314 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 PASKQ96RG2 1323 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 HSPA1AP0DMV8 641 aaKnown RBP21.14■□□□□ 0.97
COL7A1-204ENST00000462475 HSPA1BP0DMV9 641 aaKnown RBP21.14■□□□□ 0.97
COL7A1-204ENST00000462475 LMOD3Q0VAK6 560 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 PARP10Q53GL7 1025 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 EAPPQ56P03 285 aaPredicted RBP21.14■□□□□ 0.97
COL7A1-204ENST00000462475 CC2D2BQ6DHV5 1058 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 CCDC146Q8IYE0 955 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 BABAM1Q9NWV8 329 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 HACL1Q9UJ83 578 aa21.14■□□□□ 0.97
COL7A1-204ENST00000462475 MYBBP1AQ9BQG0 1328 aaKnown RBP21.13■□□□□ 0.97
COL7A1-204ENST00000462475 PPEF1O14829 653 aaPredicted RBP21.13■□□□□ 0.97
COL7A1-204ENST00000462475 DDX10Q13206 875 aaKnown RBP21.13■□□□□ 0.97
COL7A1-204ENST00000462475 PPP1R42Q7Z4L9 355 aa21.13■□□□□ 0.97
COL7A1-204ENST00000462475 RBM17Q96I25 401 aaKnown RBP21.13■□□□□ 0.97
COL7A1-204ENST00000462475 CRAMP1Q96RY5 1269 aa21.13■□□□□ 0.97
COL7A1-204ENST00000462475 MKRN1Q9UHC7 482 aaKnown RBP21.13■□□□□ 0.97
COL7A1-204ENST00000462475 TCERG1O14776 1098 aaKnown RBP21.12■□□□□ 0.97
COL7A1-204ENST00000462475 EPHX2P34913 555 aa21.12■□□□□ 0.97
COL7A1-204ENST00000462475 JDP2Q8WYK2 163 aa21.12■□□□□ 0.97
COL7A1-204ENST00000462475 NECTIN2Q92692 538 aa21.12■□□□□ 0.97
COL7A1-204ENST00000462475 ADAMTSL1Q8N6G6 1762 aa21.12■□□□□ 0.97
COL7A1-204ENST00000462475 NEUROD2Q15784 382 aa21.11■□□□□ 0.97
COL7A1-204ENST00000462475 KRT24Q2M2I5 525 aa21.11■□□□□ 0.97
COL7A1-204ENST00000462475 GPC2Q8N158 579 aa21.11■□□□□ 0.97
COL7A1-204ENST00000462475 UTP14AQ9BVJ6 771 aaKnown RBP21.11■□□□□ 0.97
COL7A1-204ENST00000462475 XAGE3Q8WTP9 111 aa21.1■□□□□ 0.97
COL7A1-204ENST00000462475 ITGBL1O95965 494 aaPredicted RBP21.09■□□□□ 0.97
COL7A1-204ENST00000462475 AIMP1Q12904 312 aaKnown RBP21.09■□□□□ 0.97
COL7A1-204ENST00000462475 COPS6Q7L5N1 327 aa21.09■□□□□ 0.97
COL7A1-204ENST00000462475 NLRP3Q96P20 1036 aa21.09■□□□□ 0.97
COL7A1-204ENST00000462475 CLEC11AQ9Y240 323 aa21.09■□□□□ 0.97
COL7A1-204ENST00000462475 CNTNAP1P78357 1384 aa21.09■□□□□ 0.97
COL7A1-204ENST00000462475 CHL1O00533 1208 aa21.08■□□□□ 0.97
COL7A1-204ENST00000462475 SLC10A5Q5PT55 438 aa21.08■□□□□ 0.97
COL7A1-204ENST00000462475 LARGE2Q8N3Y3 721 aa21.08■□□□□ 0.97
COL7A1-204ENST00000462475 TRIM35Q9UPQ4 493 aa21.08■□□□□ 0.97
COL7A1-204ENST00000462475 GJA3Q9Y6H8 435 aa21.08■□□□□ 0.97
COL7A1-204ENST00000462475 ABCC4O15439 1325 aa21.07■□□□□ 0.96
COL7A1-204ENST00000462475 EIF6P56537 245 aaKnown RBP21.07■□□□□ 0.96
COL7A1-204ENST00000462475 GRIPAP1Q4V328 841 aa21.07■□□□□ 0.96
COL7A1-204ENST00000462475 PNMA8AQ86V59 439 aaPredicted RBP21.07■□□□□ 0.96
COL7A1-204ENST00000462475 NLRP10Q86W26 655 aa21.07■□□□□ 0.96
COL7A1-204ENST00000462475 LTBP1Q14766 1721 aa21.07■□□□□ 0.96
COL7A1-204ENST00000462475 HSP90AB3PQ58FF7 597 aa21.06■□□□□ 0.96
COL7A1-204ENST00000462475 MAP1SQ66K74 1059 aaPredicted RBP21.06■□□□□ 0.96
COL7A1-204ENST00000462475 RUNDC1Q96C34 613 aa21.06■□□□□ 0.96
COL7A1-204ENST00000462475 DDX21Q9NR30 783 aaKnown RBP eCLIP21.06■□□□□ 0.96
COL7A1-204ENST00000462475 LAS1LQ9Y4W2 734 aaKnown RBP21.06■□□□□ 0.96
COL7A1-204ENST00000462475 ANKRD36CQ5JPF3 1778 aa21.05■□□□□ 0.96
COL7A1-204ENST00000462475 TMEM88BA6NKF7 163 aa21.05■□□□□ 0.96
COL7A1-204ENST00000462475 HCLS1P14317 486 aaPredicted RBP21.05■□□□□ 0.96
COL7A1-204ENST00000462475 SCNN1DP51172 638 aa21.05■□□□□ 0.96
COL7A1-204ENST00000462475 WDR43Q15061 677 aaKnown RBP eCLIP21.05■□□□□ 0.96
COL7A1-204ENST00000462475 TNS4Q8IZW8 715 aa21.05■□□□□ 0.96
COL7A1-204ENST00000462475 CHPF2Q9P2E5 772 aa21.05■□□□□ 0.96
COL7A1-204ENST00000462475 ATP6V0A2Q9Y487 856 aa21.05■□□□□ 0.96
COL7A1-204ENST00000462475 PPIP5K2O43314 1243 aa21.04■□□□□ 0.96
COL7A1-204ENST00000462475 TCIRG1Q13488 830 aa21.04■□□□□ 0.96
COL7A1-204ENST00000462475 NIM1KQ8IY84 436 aa21.04■□□□□ 0.96
COL7A1-204ENST00000462475 CNTROBQ8N137 903 aa21.04■□□□□ 0.96
COL7A1-204ENST00000462475 ADAMTS8Q9UP79 889 aa21.04■□□□□ 0.96
COL7A1-204ENST00000462475 AOC3Q16853 763 aa21.03■□□□□ 0.96
COL7A1-204ENST00000462475 ZNF428Q96B54 188 aa21.03■□□□□ 0.96
COL7A1-204ENST00000462475 LMOD1P29536 600 aaPredicted RBP21.02■□□□□ 0.96
COL7A1-204ENST00000462475 EPS15P42566 896 aa21.02■□□□□ 0.96
COL7A1-204ENST00000462475 HDGFL1Q5TGJ6 251 aa21.02■□□□□ 0.96
COL7A1-204ENST00000462475 TMX4Q9H1E5 349 aaPredicted RBP21.02■□□□□ 0.96
COL7A1-204ENST00000462475 TRMT112Q9UI30 125 aaKnown RBP21.02■□□□□ 0.96
COL7A1-204ENST00000462475 LAMB2P55268 1798 aa21.02■□□□□ 0.96
COL7A1-204ENST00000462475 SH3TC1Q8TE82 1336 aa21.02■□□□□ 0.95
COL7A1-204ENST00000462475 VEGFBP49765 207 aa21.01■□□□□ 0.95
COL7A1-204ENST00000462475 CAPN15O75808 1086 aa21■□□□□ 0.95
COL7A1-204ENST00000462475 RTFDC1Q9BY42 306 aaPredicted RBP21■□□□□ 0.95
COL7A1-204ENST00000462475 BBOX1O75936 387 aa20.99■□□□□ 0.95
COL7A1-204ENST00000462475 HOXB7P09629 217 aa20.99■□□□□ 0.95
COL7A1-204ENST00000462475 DPP8Q6V1X1 898 aaPredicted RBP20.99■□□□□ 0.95
COL7A1-204ENST00000462475 FOXN1O15353 648 aa20.98■□□□□ 0.95
COL7A1-204ENST00000462475 GRAPQ13588 217 aa20.98■□□□□ 0.95
COL7A1-204ENST00000462475 DDX46Q7L014 1031 aaKnown RBP20.98■□□□□ 0.95
COL7A1-204ENST00000462475 SP8Q8IXZ3 490 aa20.98■□□□□ 0.95
COL7A1-204ENST00000462475 SUPT20HQ8NEM7 779 aa20.98■□□□□ 0.95
COL7A1-204ENST00000462475 PLBD2Q8NHP8 589 aa20.98■□□□□ 0.95
COL7A1-204ENST00000462475 GRAPLQ8TC17 118 aaPredicted RBP20.98■□□□□ 0.95
COL7A1-204ENST00000462475 VPS33BQ9H267 617 aa20.98■□□□□ 0.95
COL7A1-204ENST00000462475 FMR1Q06787 632 aaKnown RBP eCLIP20.97■□□□□ 0.95
COL7A1-204ENST00000462475 CXCL9Q07325 125 aa20.97■□□□□ 0.95
COL7A1-204ENST00000462475 MPNDQ8N594 471 aa20.97■□□□□ 0.95
COL7A1-204ENST00000462475 CFAP44Q96MT7 982 aa20.97■□□□□ 0.95
COL7A1-204ENST00000462475 MBIPQ9NS73 344 aa20.97■□□□□ 0.95
COL7A1-204ENST00000462475 ZNRF3Q9ULT6 936 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms