RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 COL4A5P29400 1685 aa19.33■□□□□ 0.68
SMPD4-216ENST00000461187 EIF2S2P20042 333 aaKnown RBP19.32■□□□□ 0.68
SMPD4-216ENST00000461187 PSMD1Q99460 953 aa19.32■□□□□ 0.68
SMPD4-216ENST00000461187 TAF1DQ9H5J8 278 aaPredicted RBP19.32■□□□□ 0.68
SMPD4-216ENST00000461187 FZD9O00144 591 aa19.31■□□□□ 0.68
SMPD4-216ENST00000461187 LMOD3Q0VAK6 560 aa19.31■□□□□ 0.68
SMPD4-216ENST00000461187 DDX10Q13206 875 aaKnown RBP19.31■□□□□ 0.68
SMPD4-216ENST00000461187 PROSER3Q2NL68 480 aa19.31■□□□□ 0.68
SMPD4-216ENST00000461187 RPGRQ92834 1020 aaKnown RBP19.31■□□□□ 0.68
SMPD4-216ENST00000461187 MYBBP1AQ9BQG0 1328 aaKnown RBP19.3■□□□□ 0.68
SMPD4-216ENST00000461187 ANXA1P04083 346 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 CC2D2BQ6DHV5 1058 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 C3orf67Q6ZVT6 689 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 PPP1R42Q7Z4L9 355 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 LDHDQ86WU2 507 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 CRAMP1Q96RY5 1269 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 LTBP1Q14766 1721 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 TRPM7Q96QT4 1865 aa19.3■□□□□ 0.68
SMPD4-216ENST00000461187 DDX60Q8IY21 1712 aaKnown RBP19.29■□□□□ 0.68
SMPD4-216ENST00000461187 PARP10Q53GL7 1025 aa19.29■□□□□ 0.68
SMPD4-216ENST00000461187 CREBZFQ9NS37 354 aa19.29■□□□□ 0.68
SMPD4-216ENST00000461187 PASKQ96RG2 1323 aa19.28■□□□□ 0.68
SMPD4-216ENST00000461187 COL13A1Q5TAT6 717 aaPredicted RBP19.28■□□□□ 0.68
SMPD4-216ENST00000461187 SLC51AQ86UW1 340 aa19.28■□□□□ 0.68
SMPD4-216ENST00000461187 CCDC146Q8IYE0 955 aa19.28■□□□□ 0.68
SMPD4-216ENST00000461187 RBM17Q96I25 401 aaKnown RBP19.28■□□□□ 0.68
SMPD4-216ENST00000461187 HACL1Q9UJ83 578 aa19.28■□□□□ 0.68
SMPD4-216ENST00000461187 NEUROD2Q15784 382 aa19.27■□□□□ 0.68
SMPD4-216ENST00000461187 GRIPAP1Q4V328 841 aa19.27■□□□□ 0.68
SMPD4-216ENST00000461187 SLC10A5Q5PT55 438 aa19.27■□□□□ 0.68
SMPD4-216ENST00000461187 CHL1O00533 1208 aa19.26■□□□□ 0.67
SMPD4-216ENST00000461187 EPHX2P34913 555 aa19.26■□□□□ 0.67
SMPD4-216ENST00000461187 EAPPQ56P03 285 aaPredicted RBP19.26■□□□□ 0.67
SMPD4-216ENST00000461187 GPC2Q8N158 579 aa19.26■□□□□ 0.67
SMPD4-216ENST00000461187 JDP2Q8WYK2 163 aa19.26■□□□□ 0.67
SMPD4-216ENST00000461187 NECTIN2Q92692 538 aa19.26■□□□□ 0.67
SMPD4-216ENST00000461187 NLRP3Q96P20 1036 aa19.26■□□□□ 0.67
SMPD4-216ENST00000461187 UTP14AQ9BVJ6 771 aaKnown RBP19.26■□□□□ 0.67
SMPD4-216ENST00000461187 TRIM35Q9UPQ4 493 aa19.26■□□□□ 0.67
SMPD4-216ENST00000461187 RNF123Q5XPI4 1314 aa19.25■□□□□ 0.67
SMPD4-216ENST00000461187 PPEF1O14829 653 aaPredicted RBP19.25■□□□□ 0.67
SMPD4-216ENST00000461187 ITGBL1O95965 494 aaPredicted RBP19.25■□□□□ 0.67
SMPD4-216ENST00000461187 HSPA1AP0DMV8 641 aaKnown RBP19.25■□□□□ 0.67
SMPD4-216ENST00000461187 HSPA1BP0DMV9 641 aaKnown RBP19.25■□□□□ 0.67
SMPD4-216ENST00000461187 KRT24Q2M2I5 525 aa19.25■□□□□ 0.67
SMPD4-216ENST00000461187 COPS6Q7L5N1 327 aa19.25■□□□□ 0.67
SMPD4-216ENST00000461187 RUNDC1Q96C34 613 aa19.25■□□□□ 0.67
SMPD4-216ENST00000461187 TCERG1O14776 1098 aaKnown RBP19.24■□□□□ 0.67
SMPD4-216ENST00000461187 AIMP1Q12904 312 aaKnown RBP19.24■□□□□ 0.67
SMPD4-216ENST00000461187 XAGE3Q8WTP9 111 aa19.24■□□□□ 0.67
SMPD4-216ENST00000461187 DDX21Q9NR30 783 aaKnown RBP eCLIP19.24■□□□□ 0.67
SMPD4-216ENST00000461187 MKRN1Q9UHC7 482 aaKnown RBP19.24■□□□□ 0.67
SMPD4-216ENST00000461187 EIF6P56537 245 aaKnown RBP19.23■□□□□ 0.67
SMPD4-216ENST00000461187 HSP90AB3PQ58FF7 597 aa19.23■□□□□ 0.67
SMPD4-216ENST00000461187 NLRP10Q86W26 655 aa19.23■□□□□ 0.67
SMPD4-216ENST00000461187 CLEC11AQ9Y240 323 aa19.23■□□□□ 0.67
SMPD4-216ENST00000461187 LRRC37AA6NMS7 1700 aa19.22■□□□□ 0.67
SMPD4-216ENST00000461187 WDR43Q15061 677 aaKnown RBP eCLIP19.22■□□□□ 0.67
SMPD4-216ENST00000461187 PNMA8AQ86V59 439 aaPredicted RBP19.22■□□□□ 0.67
SMPD4-216ENST00000461187 LARGE2Q8N3Y3 721 aa19.22■□□□□ 0.67
SMPD4-216ENST00000461187 ADAMTS8Q9UP79 889 aa19.22■□□□□ 0.67
SMPD4-216ENST00000461187 LAS1LQ9Y4W2 734 aaKnown RBP19.22■□□□□ 0.67
SMPD4-216ENST00000461187 POLR2AP24928 1970 aaKnown RBP19.22■□□□□ 0.67
SMPD4-216ENST00000461187 ABCC4O15439 1325 aa19.22■□□□□ 0.67
SMPD4-216ENST00000461187 CNTNAP1P78357 1384 aa19.21■□□□□ 0.67
SMPD4-216ENST00000461187 TCIRG1Q13488 830 aa19.21■□□□□ 0.67
SMPD4-216ENST00000461187 ATP6V0A2Q9Y487 856 aa19.21■□□□□ 0.67
SMPD4-216ENST00000461187 GJA3Q9Y6H8 435 aa19.21■□□□□ 0.67
SMPD4-216ENST00000461187 TMEM88BA6NKF7 163 aa19.2■□□□□ 0.66
SMPD4-216ENST00000461187 HCLS1P14317 486 aaPredicted RBP19.2■□□□□ 0.66
SMPD4-216ENST00000461187 CHPF2Q9P2E5 772 aa19.2■□□□□ 0.66
SMPD4-216ENST00000461187 MAP1SQ66K74 1059 aaPredicted RBP19.19■□□□□ 0.66
SMPD4-216ENST00000461187 CNTROBQ8N137 903 aa19.19■□□□□ 0.66
SMPD4-216ENST00000461187 PPIP5K2O43314 1243 aa19.18■□□□□ 0.66
SMPD4-216ENST00000461187 HOXB7P09629 217 aa19.18■□□□□ 0.66
SMPD4-216ENST00000461187 SCNN1DP51172 638 aa19.18■□□□□ 0.66
SMPD4-216ENST00000461187 AOC3Q16853 763 aa19.18■□□□□ 0.66
SMPD4-216ENST00000461187 NIM1KQ8IY84 436 aa19.18■□□□□ 0.66
SMPD4-216ENST00000461187 RTFDC1Q9BY42 306 aaPredicted RBP19.18■□□□□ 0.66
SMPD4-216ENST00000461187 TMX4Q9H1E5 349 aaPredicted RBP19.18■□□□□ 0.66
SMPD4-216ENST00000461187 VPS33BQ9H267 617 aa19.18■□□□□ 0.66
SMPD4-216ENST00000461187 TRMT112Q9UI30 125 aaKnown RBP19.18■□□□□ 0.66
SMPD4-216ENST00000461187 SH3TC1Q8TE82 1336 aa19.18■□□□□ 0.66
SMPD4-216ENST00000461187 BBOX1O75936 387 aa19.17■□□□□ 0.66
SMPD4-216ENST00000461187 LMOD1P29536 600 aaPredicted RBP19.17■□□□□ 0.66
SMPD4-216ENST00000461187 EPS15P42566 896 aa19.17■□□□□ 0.66
SMPD4-216ENST00000461187 HDGFL1Q5TGJ6 251 aa19.17■□□□□ 0.66
SMPD4-216ENST00000461187 SP8Q8IXZ3 490 aa19.17■□□□□ 0.66
SMPD4-216ENST00000461187 DUOX1Q9NRD9 1551 aa19.16■□□□□ 0.66
SMPD4-216ENST00000461187 TNS4Q8IZW8 715 aa19.16■□□□□ 0.66
SMPD4-216ENST00000461187 PLBD2Q8NHP8 589 aa19.16■□□□□ 0.66
SMPD4-216ENST00000461187 CFAP44Q96MT7 982 aa19.16■□□□□ 0.66
SMPD4-216ENST00000461187 PRKRIP1Q9H875 184 aaPredicted RBP19.16■□□□□ 0.66
SMPD4-216ENST00000461187 COL4A1P02462 1669 aa19.15■□□□□ 0.66
SMPD4-216ENST00000461187 VEGFBP49765 207 aa19.15■□□□□ 0.66
SMPD4-216ENST00000461187 ANKRD13DQ6ZTN6 518 aa19.15■□□□□ 0.66
SMPD4-216ENST00000461187 DDX46Q7L014 1031 aaKnown RBP19.15■□□□□ 0.66
SMPD4-216ENST00000461187 SUPT20HQ8NEM7 779 aa19.15■□□□□ 0.66
SMPD4-216ENST00000461187 ZNF428Q96B54 188 aa19.15■□□□□ 0.66
SMPD4-216ENST00000461187 DBF4Q9UBU7 674 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms