RNA–Protein interactions for RNA: ENST00000438092.6

SHPRH-206, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

TSL 1 (best) BASIC

Gene SHPRH, Length 6,994 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-206ENST00000438092 CCDC91Q7Z6B0 441 aa11.93□□□□□ -0.5
SHPRH-206ENST00000438092 ACEP12821 1306 aa11.93□□□□□ -0.5
SHPRH-206ENST00000438092 VPS36Q86VN1 386 aa11.93□□□□□ -0.5
SHPRH-206ENST00000438092 SFPQP23246 707 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHPRH-206ENST00000438092 TCP11L1Q9NUJ3 509 aa11.93□□□□□ -0.5
SHPRH-206ENST00000438092 IARSP41252 1262 aaKnown RBP11.92□□□□□ -0.5
SHPRH-206ENST00000438092 ANO10Q9NW15 660 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 HOOK3Q86VS8 718 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 NECAB1Q8N987 351 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 PUS7Q96PZ0 661 aaKnown RBP11.92□□□□□ -0.5
SHPRH-206ENST00000438092 NIP7Q9Y221 180 aaKnown RBP eCLIP11.92□□□□□ -0.5
SHPRH-206ENST00000438092 TOPBP1Q92547 1522 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 ADGRL1O94910 1474 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 KIF5CO60282 957 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 AFMP43652 599 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 LMAN1P49257 510 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 CCDC152Q4G0S7 254 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 CRACR2AQ9BSW2 395 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 CLIP2Q9UDT6 1046 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 HELBQ8NG08 1087 aaPredicted RBP11.92□□□□□ -0.5
SHPRH-206ENST00000438092 UBXN4Q92575 508 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 TFCP2L1Q9NZI6 479 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 SLC4A4Q9Y6R1 1079 aa11.92□□□□□ -0.5
SHPRH-206ENST00000438092 CALM1P0DP23 149 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 CALM2P0DP24 149 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 CALM3P0DP25 149 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 HLTFQ14527 1009 aaKnown RBP eCLIP11.91□□□□□ -0.53e-6■■□□□ 13
SHPRH-206ENST00000438092 CCDC66A2RUB6 948 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 TMC6Q7Z403 805 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 CRNKL1Q9BZJ0 848 aaKnown RBP11.91□□□□□ -0.5
SHPRH-206ENST00000438092 SYNCQ9H7C4 482 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 ORC3Q9UBD5 711 aaPredicted RBP11.91□□□□□ -0.5
SHPRH-206ENST00000438092 KIF5BP33176 963 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 ZCRB1Q8TBF4 217 aaKnown RBP11.91□□□□□ -0.5
SHPRH-206ENST00000438092 LRRC59Q96AG4 307 aaKnown RBP11.91□□□□□ -0.5
SHPRH-206ENST00000438092 EVI5LQ96CN4 794 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 ZNF408Q9H9D4 720 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 FGFR1OPO95684 399 aaKnown RBP11.91□□□□□ -0.5
SHPRH-206ENST00000438092 IFIT1BQ5T764 474 aaKnown RBP11.91□□□□□ -0.5
SHPRH-206ENST00000438092 CHST3Q7LGC8 479 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 GJC1P36383 396 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 UBA7P41226 1012 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 PTPN14Q15678 1187 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 RBM27Q9P2N5 1060 aaKnown RBP11.91□□□□□ -0.5
SHPRH-206ENST00000438092 GJA3Q9Y6H8 435 aa11.91□□□□□ -0.5
SHPRH-206ENST00000438092 LRPPRCP42704 1394 aaKnown RBP11.9□□□□□ -0.5
SHPRH-206ENST00000438092 TRIM27P14373 513 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 TTF1Q15361 905 aaPredicted RBP11.9□□□□□ -0.5
SHPRH-206ENST00000438092 OGFOD1Q8N543 542 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 XAGE3Q8WTP9 111 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 LDHCP07864 332 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 HMGB1P09429 215 aaKnown RBP11.9□□□□□ -0.5
SHPRH-206ENST00000438092 ANKRD13DQ6ZTN6 518 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 MBIPQ9NS73 344 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 ARL1P40616 181 aaPredicted RBP11.9□□□□□ -0.5
SHPRH-206ENST00000438092 CCDC183Q5T5S1 534 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 ZSWIM4Q9H7M6 989 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 PHAXQ9H814 394 aaKnown RBP11.9□□□□□ -0.5
SHPRH-206ENST00000438092 SNRPA1P09661 255 aaKnown RBP11.9□□□□□ -0.5
SHPRH-206ENST00000438092 TMCO3Q6UWJ1 677 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 LIMCH1Q9UPQ0 1083 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 NOS1P29475 1434 aa11.9□□□□□ -0.5
SHPRH-206ENST00000438092 BIN2Q9UBW5 565 aaPredicted RBP11.9□□□□□ -0.51
SHPRH-206ENST00000438092 COPS6Q7L5N1 327 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 POLR3GO15318 223 aaPredicted RBP11.89□□□□□ -0.51
SHPRH-206ENST00000438092 NEK1Q96PY6 1258 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 USP25Q9UHP3 1055 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 POLA1P09884 1462 aaPredicted RBP11.89□□□□□ -0.51
SHPRH-206ENST00000438092 PHACTR2O75167 634 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 MRPS9P82933 396 aaKnown RBP11.89□□□□□ -0.51
SHPRH-206ENST00000438092 MIGA1Q8NAN2 632 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 TMEM110-MUSTN1A8MSY1 372 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 WTAPQ15007 396 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 SPECC1Q5M775 1068 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 PLB1Q6P1J6 1458 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 KIF14Q15058 1648 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 NCOA7Q8NI08 942 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 ECHDC1Q9NTX5 307 aa11.89□□□□□ -0.51
SHPRH-206ENST00000438092 CAMSAP2Q08AD1 1489 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 HSPA2P54652 639 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 CETN1Q12798 172 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 CCDC174Q6PII3 467 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 HDAC9Q9UKV0 1011 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 MSH6P52701 1360 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 SIRT1Q96EB6 747 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 RNF216Q9NWF9 866 aaPredicted RBP11.88□□□□□ -0.51
SHPRH-206ENST00000438092 PKD2L1Q9P0L9 805 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 ALDH1L2Q3SY69 923 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 C16orf45Q96MC5 204 aaPredicted RBP11.88□□□□□ -0.51
SHPRH-206ENST00000438092 PRDM10Q9NQV6 1147 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 TIAM1Q13009 1591 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 KLF18A0A0U1RQI7 1052 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 TBCAO75347 108 aaKnown RBP11.88□□□□□ -0.51
SHPRH-206ENST00000438092 CCDC12Q8WUD4 166 aaPredicted RBP11.88□□□□□ -0.51
SHPRH-206ENST00000438092 ZFP91Q96JP5 570 aaPredicted RBP11.88□□□□□ -0.51
SHPRH-206ENST00000438092 USO1O60763 962 aaKnown RBP11.88□□□□□ -0.51
SHPRH-206ENST00000438092 YEATS4O95619 227 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 ARID5AQ03989 594 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 ZRANB1Q9UGI0 708 aa11.88□□□□□ -0.51
SHPRH-206ENST00000438092 CCDC141Q6ZP82 1450 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms