RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 ADAMTSL1Q8N6G6 1762 aa17.07■□□□□ 0.32
VRK3-203ENST00000424804 ANXA1P04083 346 aa17.07■□□□□ 0.32
VRK3-203ENST00000424804 TAF1DQ9H5J8 278 aaPredicted RBP17.07■□□□□ 0.32
VRK3-203ENST00000424804 PASKQ96RG2 1323 aa17.06■□□□□ 0.32
VRK3-203ENST00000424804 MYBBP1AQ9BQG0 1328 aaKnown RBP17.06■□□□□ 0.32
VRK3-203ENST00000424804 IARSP41252 1262 aaKnown RBP17.06■□□□□ 0.32
VRK3-203ENST00000424804 KIF6Q6ZMV9 814 aa17.06■□□□□ 0.32
VRK3-203ENST00000424804 PSMD1Q99460 953 aa17.06■□□□□ 0.32
VRK3-203ENST00000424804 TRIM35Q9UPQ4 493 aa17.06■□□□□ 0.32
VRK3-203ENST00000424804 CHL1O00533 1208 aa17.05■□□□□ 0.32
VRK3-203ENST00000424804 ITGBL1O95965 494 aaPredicted RBP17.05■□□□□ 0.32
VRK3-203ENST00000424804 GTF2E1P29083 439 aaPredicted RBP17.05■□□□□ 0.32
VRK3-203ENST00000424804 KRT24Q2M2I5 525 aa17.05■□□□□ 0.32
VRK3-203ENST00000424804 SLC10A5Q5PT55 438 aa17.05■□□□□ 0.32
VRK3-203ENST00000424804 COL13A1Q5TAT6 717 aaPredicted RBP17.05■□□□□ 0.32
VRK3-203ENST00000424804 CRAMP1Q96RY5 1269 aa17.05■□□□□ 0.32
VRK3-203ENST00000424804 EIF2S2P20042 333 aaKnown RBP17.04■□□□□ 0.32
VRK3-203ENST00000424804 LTBP1Q14766 1721 aa17.04■□□□□ 0.32
VRK3-203ENST00000424804 CCDC146Q8IYE0 955 aa17.03■□□□□ 0.32
VRK3-203ENST00000424804 LAMB2P55268 1798 aa17.02■□□□□ 0.32
VRK3-203ENST00000424804 ANKRD36CQ5JPF3 1778 aa17.02■□□□□ 0.32
VRK3-203ENST00000424804 CC2D2BQ6DHV5 1058 aa17.02■□□□□ 0.32
VRK3-203ENST00000424804 LDHDQ86WU2 507 aa17.02■□□□□ 0.32
VRK3-203ENST00000424804 PRKRIP1Q9H875 184 aaPredicted RBP17.02■□□□□ 0.32
VRK3-203ENST00000424804 CREBZFQ9NS37 354 aa17.02■□□□□ 0.32
VRK3-203ENST00000424804 IQCA1LA6NCM1 817 aa17.01■□□□□ 0.31
VRK3-203ENST00000424804 PARP10Q53GL7 1025 aa17.01■□□□□ 0.31
VRK3-203ENST00000424804 COPS6Q7L5N1 327 aa17.01■□□□□ 0.31
VRK3-203ENST00000424804 PPP1R42Q7Z4L9 355 aa17■□□□□ 0.31
VRK3-203ENST00000424804 NLRP10Q86W26 655 aa17■□□□□ 0.31
VRK3-203ENST00000424804 XAGE3Q8WTP9 111 aa17■□□□□ 0.31
VRK3-203ENST00000424804 NECTIN2Q92692 538 aa17■□□□□ 0.31
VRK3-203ENST00000424804 RBM17Q96I25 401 aaKnown RBP17■□□□□ 0.31
VRK3-203ENST00000424804 HACL1Q9UJ83 578 aa17■□□□□ 0.31
VRK3-203ENST00000424804 ADAMTS8Q9UP79 889 aa17■□□□□ 0.31
VRK3-203ENST00000424804 RNF123Q5XPI4 1314 aa16.99■□□□□ 0.31
VRK3-203ENST00000424804 TAF1P21675 1872 aa16.99■□□□□ 0.31
VRK3-203ENST00000424804 HSPA1AP0DMV8 641 aaKnown RBP16.99■□□□□ 0.31
VRK3-203ENST00000424804 HSPA1BP0DMV9 641 aaKnown RBP16.99■□□□□ 0.31
VRK3-203ENST00000424804 EPHX2P34913 555 aa16.99■□□□□ 0.31
VRK3-203ENST00000424804 WDR43Q15061 677 aaKnown RBP eCLIP16.99■□□□□ 0.31
VRK3-203ENST00000424804 NEUROD2Q15784 382 aa16.99■□□□□ 0.31
VRK3-203ENST00000424804 GPC2Q8N158 579 aa16.99■□□□□ 0.31
VRK3-203ENST00000424804 RPGRQ92834 1020 aaKnown RBP16.99■□□□□ 0.31
VRK3-203ENST00000424804 RUNDC1Q96C34 613 aa16.99■□□□□ 0.31
VRK3-203ENST00000424804 UTP14AQ9BVJ6 771 aaKnown RBP16.99■□□□□ 0.31
VRK3-203ENST00000424804 DDX21Q9NR30 783 aaKnown RBP eCLIP16.99■□□□□ 0.31
VRK3-203ENST00000424804 PPEF1O14829 653 aaPredicted RBP16.98■□□□□ 0.31
VRK3-203ENST00000424804 LMOD3Q0VAK6 560 aa16.98■□□□□ 0.31
VRK3-203ENST00000424804 TCIRG1Q13488 830 aa16.98■□□□□ 0.31
VRK3-203ENST00000424804 NLRP3Q96P20 1036 aa16.98■□□□□ 0.31
VRK3-203ENST00000424804 ABCC4O15439 1325 aa16.97■□□□□ 0.31
VRK3-203ENST00000424804 TCERG1O14776 1098 aaKnown RBP16.97■□□□□ 0.31
VRK3-203ENST00000424804 AIMP1Q12904 312 aaKnown RBP16.97■□□□□ 0.31
VRK3-203ENST00000424804 GRIPAP1Q4V328 841 aa16.97■□□□□ 0.31
VRK3-203ENST00000424804 RTFDC1Q9BY42 306 aaPredicted RBP16.97■□□□□ 0.31
VRK3-203ENST00000424804 MKRN1Q9UHC7 482 aaKnown RBP16.97■□□□□ 0.31
VRK3-203ENST00000424804 ATP6V0A2Q9Y487 856 aa16.97■□□□□ 0.31
VRK3-203ENST00000424804 HCLS1P14317 486 aaPredicted RBP16.96■□□□□ 0.31
VRK3-203ENST00000424804 SCNN1DP51172 638 aa16.96■□□□□ 0.31
VRK3-203ENST00000424804 EAPPQ56P03 285 aaPredicted RBP16.96■□□□□ 0.31
VRK3-203ENST00000424804 CNTNAP1P78357 1384 aa16.96■□□□□ 0.31
VRK3-203ENST00000424804 COL4A1P02462 1669 aa16.95■□□□□ 0.3
VRK3-203ENST00000424804 ZNF853P0CG23 659 aa16.95■□□□□ 0.3
VRK3-203ENST00000424804 EPS15P42566 896 aa16.95■□□□□ 0.3
VRK3-203ENST00000424804 MAP1SQ66K74 1059 aaPredicted RBP16.95■□□□□ 0.3
VRK3-203ENST00000424804 JDP2Q8WYK2 163 aa16.95■□□□□ 0.3
VRK3-203ENST00000424804 CHPF2Q9P2E5 772 aa16.95■□□□□ 0.3
VRK3-203ENST00000424804 DDX60Q8IY21 1712 aaKnown RBP16.95■□□□□ 0.3
VRK3-203ENST00000424804 PNMA8AQ86V59 439 aaPredicted RBP16.94■□□□□ 0.3
VRK3-203ENST00000424804 CNTROBQ8N137 903 aa16.94■□□□□ 0.3
VRK3-203ENST00000424804 LARGE2Q8N3Y3 721 aa16.94■□□□□ 0.3
VRK3-203ENST00000424804 ISCA1Q9BUE6 129 aa16.94■□□□□ 0.3
VRK3-203ENST00000424804 TMEM88BA6NKF7 163 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 ANP32CO43423 234 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 HOXB7P09629 217 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 EIF6P56537 245 aaKnown RBP16.93■□□□□ 0.3
VRK3-203ENST00000424804 FMR1Q06787 632 aaKnown RBP eCLIP16.93■□□□□ 0.3
VRK3-203ENST00000424804 AOC3Q16853 763 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 HSP90AB3PQ58FF7 597 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 SP8Q8IXZ3 490 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 CFAP44Q96MT7 982 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 VPS33BQ9H267 617 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 LAS1LQ9Y4W2 734 aaKnown RBP16.93■□□□□ 0.3
VRK3-203ENST00000424804 GJA3Q9Y6H8 435 aa16.93■□□□□ 0.3
VRK3-203ENST00000424804 BBOX1O75936 387 aa16.92■□□□□ 0.3
VRK3-203ENST00000424804 VEGFBP49765 207 aa16.92■□□□□ 0.3
VRK3-203ENST00000424804 PLBD2Q8NHP8 589 aa16.92■□□□□ 0.3
VRK3-203ENST00000424804 ZNF428Q96B54 188 aa16.92■□□□□ 0.3
VRK3-203ENST00000424804 TRMT112Q9UI30 125 aaKnown RBP16.92■□□□□ 0.3
VRK3-203ENST00000424804 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
VRK3-203ENST00000424804 DUOX1Q9NRD9 1551 aa16.92■□□□□ 0.3
VRK3-203ENST00000424804 CXCL9Q07325 125 aa16.91■□□□□ 0.3
VRK3-203ENST00000424804 HDGFL1Q5TGJ6 251 aa16.91■□□□□ 0.3
VRK3-203ENST00000424804 DUSP27Q5VZP5 1158 aa16.91■□□□□ 0.3
VRK3-203ENST00000424804 MBIPQ9NS73 344 aa16.91■□□□□ 0.3
VRK3-203ENST00000424804 SH3TC1Q8TE82 1336 aa16.91■□□□□ 0.3
VRK3-203ENST00000424804 LRRC37AA6NMS7 1700 aa16.9■□□□□ 0.3
VRK3-203ENST00000424804 PPIP5K2O43314 1243 aa16.9■□□□□ 0.3
VRK3-203ENST00000424804 GRAPQ13588 217 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms