RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 NECTIN2Q92692 538 aa16.72■□□□□ 0.27
CD44-203ENST00000278386 SNED1Q8TER0 1413 aa16.71■□□□□ 0.27
CD44-203ENST00000278386 PROSER3Q2NL68 480 aa16.71■□□□□ 0.27
CD44-203ENST00000278386 PARP10Q53GL7 1025 aa16.71■□□□□ 0.27
CD44-203ENST00000278386 ZNF34Q8IZ26 560 aa16.71■□□□□ 0.27
CD44-203ENST00000278386 RBM17Q96I25 401 aaKnown RBP16.71■□□□□ 0.27
CD44-203ENST00000278386 L3MBTL3Q96JM7 780 aaPredicted RBP16.71■□□□□ 0.27
CD44-203ENST00000278386 BABAM1Q9NWV8 329 aa16.71■□□□□ 0.27
CD44-203ENST00000278386 LAS1LQ9Y4W2 734 aaKnown RBP16.71■□□□□ 0.27
CD44-203ENST00000278386 ADAMTSL1Q8N6G6 1762 aa16.7■□□□□ 0.26
CD44-203ENST00000278386 TCERG1O14776 1098 aaKnown RBP16.7■□□□□ 0.26
CD44-203ENST00000278386 PPEF1O14829 653 aaPredicted RBP16.7■□□□□ 0.26
CD44-203ENST00000278386 EAPPQ56P03 285 aaPredicted RBP16.7■□□□□ 0.26
CD44-203ENST00000278386 COL4A5P29400 1685 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 AIMP1Q12904 312 aaKnown RBP16.69■□□□□ 0.26
CD44-203ENST00000278386 PDIA6Q15084 440 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 CC2D2BQ6DHV5 1058 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 LDHDQ86WU2 507 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 JDP2Q8WYK2 163 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 PSMD1Q99460 953 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 TAF1DQ9H5J8 278 aaPredicted RBP16.69■□□□□ 0.26
CD44-203ENST00000278386 HACL1Q9UJ83 578 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 PCNTO95613 3336 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 RNF123Q5XPI4 1314 aa16.69■□□□□ 0.26
CD44-203ENST00000278386 DDX60Q8IY21 1712 aaKnown RBP16.68■□□□□ 0.26
CD44-203ENST00000278386 HOXA10P31260 410 aaPredicted RBP16.68■□□□□ 0.26
CD44-203ENST00000278386 LRP10Q7Z4F1 713 aa16.68■□□□□ 0.26
CD44-203ENST00000278386 RUNDC1Q96C34 613 aa16.68■□□□□ 0.26
CD44-203ENST00000278386 UTP14AQ9BVJ6 771 aaKnown RBP16.68■□□□□ 0.26
CD44-203ENST00000278386 TAF1P21675 1872 aa16.67■□□□□ 0.26
CD44-203ENST00000278386 EIF6P56537 245 aaKnown RBP16.67■□□□□ 0.26
CD44-203ENST00000278386 HSP90AB3PQ58FF7 597 aa16.67■□□□□ 0.26
CD44-203ENST00000278386 C3orf67Q6ZVT6 689 aa16.67■□□□□ 0.26
CD44-203ENST00000278386 XAGE3Q8WTP9 111 aa16.67■□□□□ 0.26
CD44-203ENST00000278386 NLRP3Q96P20 1036 aa16.67■□□□□ 0.26
CD44-203ENST00000278386 TMX4Q9H1E5 349 aaPredicted RBP16.67■□□□□ 0.26
CD44-203ENST00000278386 CLEC11AQ9Y240 323 aa16.67■□□□□ 0.26
CD44-203ENST00000278386 FZD9O00144 591 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 EPHX2P34913 555 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 LTBP1Q14766 1721 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 KRT24Q2M2I5 525 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 COPS6Q7L5N1 327 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 SLC51AQ86UW1 340 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 LARGE2Q8N3Y3 721 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 CRAMP1Q96RY5 1269 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 CREBZFQ9NS37 354 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 GJA3Q9Y6H8 435 aa16.66■□□□□ 0.26
CD44-203ENST00000278386 GRIPAP1Q4V328 841 aa16.65■□□□□ 0.26
CD44-203ENST00000278386 GPC2Q8N158 579 aa16.65■□□□□ 0.26
CD44-203ENST00000278386 MKRN1Q9UHC7 482 aaKnown RBP16.65■□□□□ 0.26
CD44-203ENST00000278386 ABCC4O15439 1325 aa16.65■□□□□ 0.26
CD44-203ENST00000278386 HSPA1AP0DMV8 641 aaKnown RBP16.64■□□□□ 0.25
CD44-203ENST00000278386 HSPA1BP0DMV9 641 aaKnown RBP16.64■□□□□ 0.25
CD44-203ENST00000278386 HDGFL1Q5TGJ6 251 aa16.64■□□□□ 0.25
CD44-203ENST00000278386 DDX21Q9NR30 783 aaKnown RBP eCLIP16.64■□□□□ 0.25
CD44-203ENST00000278386 CHPF2Q9P2E5 772 aa16.64■□□□□ 0.25
CD44-203ENST00000278386 TRIM35Q9UPQ4 493 aa16.64■□□□□ 0.25
CD44-203ENST00000278386 LRRC37AA6NMS7 1700 aa16.63■□□□□ 0.25
CD44-203ENST00000278386 CHL1O00533 1208 aa16.63■□□□□ 0.25
CD44-203ENST00000278386 PPIP5K2O43314 1243 aa16.63■□□□□ 0.25
CD44-203ENST00000278386 LMOD1P29536 600 aaPredicted RBP16.63■□□□□ 0.25
CD44-203ENST00000278386 NLRP10Q86W26 655 aa16.63■□□□□ 0.25
CD44-203ENST00000278386 NIM1KQ8IY84 436 aa16.63■□□□□ 0.25
CD44-203ENST00000278386 ADAMTS8Q9UP79 889 aa16.63■□□□□ 0.25
CD44-203ENST00000278386 COL13A1Q5TAT6 717 aaPredicted RBP16.62■□□□□ 0.25
CD44-203ENST00000278386 PNMA8AQ86V59 439 aaPredicted RBP16.62■□□□□ 0.25
CD44-203ENST00000278386 TRMT112Q9UI30 125 aaKnown RBP16.62■□□□□ 0.25
CD44-203ENST00000278386 TRPM7Q96QT4 1865 aa16.62■□□□□ 0.25
CD44-203ENST00000278386 SH3TC1Q8TE82 1336 aa16.62■□□□□ 0.25
CD44-203ENST00000278386 PASKQ96RG2 1323 aa16.62■□□□□ 0.25
CD44-203ENST00000278386 HCLS1P14317 486 aaPredicted RBP16.61■□□□□ 0.25
CD44-203ENST00000278386 TCIRG1Q13488 830 aa16.61■□□□□ 0.25
CD44-203ENST00000278386 AOC3Q16853 763 aa16.61■□□□□ 0.25
CD44-203ENST00000278386 ZNF428Q96B54 188 aa16.61■□□□□ 0.25
CD44-203ENST00000278386 PRKRIP1Q9H875 184 aaPredicted RBP16.61■□□□□ 0.25
CD44-203ENST00000278386 ATP6V0A2Q9Y487 856 aa16.61■□□□□ 0.25
CD44-203ENST00000278386 CNTNAP1P78357 1384 aa16.61■□□□□ 0.25
CD44-203ENST00000278386 TMEM88BA6NKF7 163 aa16.6■□□□□ 0.25
CD44-203ENST00000278386 HOXB7P09629 217 aa16.6■□□□□ 0.25
CD44-203ENST00000278386 SLC10A5Q5PT55 438 aa16.6■□□□□ 0.25
CD44-203ENST00000278386 MAP1SQ66K74 1059 aaPredicted RBP16.6■□□□□ 0.25
CD44-203ENST00000278386 DDX46Q7L014 1031 aaKnown RBP16.6■□□□□ 0.25
CD44-203ENST00000278386 SUPT20HQ8NEM7 779 aa16.59■□□□□ 0.25
CD44-203ENST00000278386 DBF4Q9UBU7 674 aaPredicted RBP16.59■□□□□ 0.25
CD44-203ENST00000278386 ITGBL1O95965 494 aaPredicted RBP16.58■□□□□ 0.24
CD44-203ENST00000278386 GRAPQ13588 217 aa16.58■□□□□ 0.24
CD44-203ENST00000278386 DPP8Q6V1X1 898 aaPredicted RBP16.58■□□□□ 0.24
CD44-203ENST00000278386 TNS4Q8IZW8 715 aa16.58■□□□□ 0.24
CD44-203ENST00000278386 PLBD2Q8NHP8 589 aa16.58■□□□□ 0.24
CD44-203ENST00000278386 GRAPLQ8TC17 118 aaPredicted RBP16.58■□□□□ 0.24
CD44-203ENST00000278386 CFAP44Q96MT7 982 aa16.58■□□□□ 0.24
CD44-203ENST00000278386 MBIPQ9NS73 344 aa16.58■□□□□ 0.24
CD44-203ENST00000278386 DUOX1Q9NRD9 1551 aa16.58■□□□□ 0.24
CD44-203ENST00000278386 SCNN1DP51172 638 aa16.57■□□□□ 0.24
CD44-203ENST00000278386 DUSP27Q5VZP5 1158 aa16.57■□□□□ 0.24
CD44-203ENST00000278386 CNTROBQ8N137 903 aa16.57■□□□□ 0.24
CD44-203ENST00000278386 MPNDQ8N594 471 aa16.57■□□□□ 0.24
CD44-203ENST00000278386 ATP5J2-PTCD1G3V325 749 aa16.56■□□□□ 0.24
CD44-203ENST00000278386 BBOX1O75936 387 aa16.56■□□□□ 0.24
CD44-203ENST00000278386 EPS15P42566 896 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms