RNA–Protein interactions for RNA: YOL112W

MSB4, Transcript of GTPase-activating protein of the Ras superfamily, yeast

Gene MSB4, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSB4	YOL112W	GRS1	P38088	690 aa	Known RBP	10.54	□□□□□ -0.72
MSB4	YOL112W	ALD5	P40047	520 aa	Known RBP	10.54	□□□□□ -0.72
MSB4	YOL112W	CAF130	P53280	1122 aa	Predicted RBP	10.54	□□□□□ -0.72
MSB4	YOL112W	YPL216W	Q08964	1102 aa		10.54	□□□□□ -0.72
MSB4	YOL112W	HIP1	P06775	603 aa		10.53	□□□□□ -0.72
MSB4	YOL112W	COT1	P32798	439 aa		10.53	□□□□□ -0.72
MSB4	YOL112W	YEL1	P34225	687 aa		10.53	□□□□□ -0.72
MSB4	YOL112W	RTT102	P53330	157 aa		10.53	□□□□□ -0.72
MSB4	YOL112W	IES4	Q08561	116 aa		10.53	□□□□□ -0.72
MSB4	YOL112W	RPL22A	P05749	121 aa	Known RBP	10.52	□□□□□ -0.73
MSB4	YOL112W	BIM1	P40013	344 aa		10.52	□□□□□ -0.73
MSB4	YOL112W	LSC2	P53312	427 aa		10.52	□□□□□ -0.73
MSB4	YOL112W	KRE33	P53914	1056 aa	Known RBP	10.52	□□□□□ -0.73
MSB4	YOL112W	TLG2	Q08144	397 aa		10.52	□□□□□ -0.73
MSB4	YOL112W	HIF1	Q12373	385 aa		10.52	□□□□□ -0.73
MSB4	YOL112W	DAL7	P21826	554 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	CAD1	P24813	409 aa	Known RBP	10.51	□□□□□ -0.73
MSB4	YOL112W	RPC53	P25441	422 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	TMT1	P32643	299 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	YSC83	P32792	385 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	RSM25	P40496	264 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	FOL2	P51601	243 aa	Known RBP	10.51	□□□□□ -0.73
MSB4	YOL112W	NBP1	P52919	319 aa	Predicted RBP	10.51	□□□□□ -0.73
MSB4	YOL112W	TAM41	P53230	385 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	YNL146W	P53906	100 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	SEC5	P89102	971 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	MUK1	Q02866	612 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	YPL277C	Q08989	487 aa		10.51	□□□□□ -0.73
MSB4	YOL112W	WHI2	P12611	486 aa		10.5	□□□□□ -0.73
MSB4	YOL112W	NAM7	P30771	971 aa	Known RBP	10.5	□□□□□ -0.73
MSB4	YOL112W	DRE2	P36152	348 aa		10.5	□□□□□ -0.73
MSB4	YOL112W	HUL4	P40985	892 aa		10.5	□□□□□ -0.73
MSB4	YOL112W	AFT2	Q08957	416 aa		10.5	□□□□□ -0.73
MSB4	YOL112W	YPR117W	Q06116	2489 aa		10.5	□□□□□ -0.73
MSB4	YOL112W	PCK1	P10963	549 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	TRK2	P28584	889 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	RPN12	P32496	274 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	NPR3	P38742	1146 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	BRL1	P38770	471 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	YFL034W	P43564	1073 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	ENV11	P53246	860 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	CUR1	Q06469	252 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	YOL075C	Q08234	1294 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	ETT1	Q08421	412 aa	Known RBP	10.49	□□□□□ -0.73
MSB4	YOL112W	HFI1	Q12060	488 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	TFC8	Q12308	588 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	MNN4	P36044	1178 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	UBP13	P38187	747 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	JJJ3	P47138	172 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	MNP1	P53163	194 aa	Predicted RBP	10.49	□□□□□ -0.73
MSB4	YOL112W	YDR090C	Q03193	310 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	TCO89	Q08921	799 aa		10.49	□□□□□ -0.73
MSB4	YOL112W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	10.48	□□□□□ -0.73	not detected
MSB4	YOL112W	YKL091C	P33324	310 aa	Known RBP	10.48	□□□□□ -0.73
MSB4	YOL112W	VID24	P38263	362 aa		10.48	□□□□□ -0.73
MSB4	YOL112W	FUB1	P25659	250 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	GSY2	P27472	705 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	PSO2	P30620	661 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	DPH2	P32461	534 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	TOS3	P43637	560 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	YGR237C	P50089	785 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	CUL3	P53202	744 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	VTC3	Q02725	835 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	SPP382	Q06411	708 aa	Predicted RBP	10.47	□□□□□ -0.73
MSB4	YOL112W	OSW2	Q12202	724 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	ZPS1	Q12512	249 aa		10.47	□□□□□ -0.73
MSB4	YOL112W	LAA1	P39526	2014 aa		10.46	□□□□□ -0.73
MSB4	YOL112W	COX4	P04037	155 aa		10.46	□□□□□ -0.74
MSB4	YOL112W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	10.46	□□□□□ -0.74	not detected
MSB4	YOL112W	PHO8	P11491	566 aa		10.46	□□□□□ -0.74
MSB4	YOL112W	ROX1	P25042	368 aa		10.46	□□□□□ -0.74
MSB4	YOL112W	POA1	P38218	177 aa		10.46	□□□□□ -0.74
MSB4	YOL112W	EAF7	P53911	425 aa	Known RBP	10.46	□□□□□ -0.74
MSB4	YOL112W	CDC53	Q12018	815 aa	Known RBP	10.46	□□□□□ -0.74
MSB4	YOL112W	ADE4	P04046	510 aa	Known RBP	10.45	□□□□□ -0.74
MSB4	YOL112W	ADE2	P21264	571 aa	Known RBP	10.45	□□□□□ -0.74
MSB4	YOL112W	VPS35	P34110	944 aa		10.45	□□□□□ -0.74
MSB4	YOL112W	ARL1	P38116	183 aa	Known RBP	10.45	□□□□□ -0.74
MSB4	YOL112W	UBX7	P38349	436 aa		10.45	□□□□□ -0.74
MSB4	YOL112W	RRM3	P38766	723 aa		10.45	□□□□□ -0.74
MSB4	YOL112W	UBP5	P39944	805 aa		10.45	□□□□□ -0.74
MSB4	YOL112W	CCM1	P48237	864 aa	Predicted RBP	10.45	□□□□□ -0.74
MSB4	YOL112W	GCV2	P49095	1034 aa		10.45	□□□□□ -0.74
MSB4	YOL112W	ORC5	P50874	479 aa		10.45	□□□□□ -0.74
MSB4	YOL112W	SWI6	P09959	803 aa		10.44	□□□□□ -0.74
MSB4	YOL112W	MRF1	P30775	413 aa	Predicted RBP	10.44	□□□□□ -0.74
MSB4	YOL112W	BCD1	P38772	366 aa		10.44	□□□□□ -0.74
MSB4	YOL112W	LCB2	P40970	561 aa		10.44	□□□□□ -0.74
MSB4	YOL112W	AIP1	P46680	615 aa	Known RBP	10.44	□□□□□ -0.74
MSB4	YOL112W	YGR035C	P53222	116 aa		10.44	□□□□□ -0.74
MSB4	YOL112W	SSL2	Q00578	843 aa		10.44	□□□□□ -0.74
MSB4	YOL112W	TRS130	Q03660	1102 aa		10.44	□□□□□ -0.74
MSB4	YOL112W	DOT1	Q04089	582 aa	Known RBP	10.44	□□□□□ -0.74
MSB4	YOL112W	ECM7	Q06200	448 aa		10.44	□□□□□ -0.74
MSB4	YOL112W	TOM70	P07213	617 aa	Known RBP	10.43	□□□□□ -0.74
MSB4	YOL112W	OM45	P16547	393 aa		10.43	□□□□□ -0.74
MSB4	YOL112W	GLN3	P18494	730 aa		10.43	□□□□□ -0.74
MSB4	YOL112W	VID30	P53076	958 aa		10.43	□□□□□ -0.74
MSB4	YOL112W	MED1	Q12321	566 aa		10.43	□□□□□ -0.74
MSB4	YOL112W	AHC1	Q12433	566 aa		10.43	□□□□□ -0.74

Retrieved 100 of 5,963 RNA–protein pairs in 43.2 ms