RNA–Protein interactions for RNA: YKL141W

SDH3, Transcript of Subunit of succinate dehydrogenase and of TIM22 translocase, yeast

Gene SDH3, Length 597 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SDH3	YKL141W	SRT1	Q03175	343 aa		4.7	□□□□□ -1.66
SDH3	YKL141W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
SDH3	YKL141W	HRQ1	Q05549	1077 aa		4.7	□□□□□ -1.66
SDH3	YKL141W	DUT1	P33317	147 aa		4.69	□□□□□ -1.66
SDH3	YKL141W	GIC1	P38785	314 aa		4.69	□□□□□ -1.66
SDH3	YKL141W	QRI1	P43123	477 aa	Known RBP	4.69	□□□□□ -1.66
SDH3	YKL141W	STU2	P46675	888 aa		4.69	□□□□□ -1.66
SDH3	YKL141W	YGL176C	P46945	554 aa		4.69	□□□□□ -1.66
SDH3	YKL141W	TYW3	P53177	273 aa		4.69	□□□□□ -1.66
SDH3	YKL141W	TMN2	Q04562	672 aa		4.69	□□□□□ -1.66
SDH3	YKL141W	TAF7	Q05021	590 aa		4.69	□□□□□ -1.66
SDH3	YKL141W	YKL107W	P34251	309 aa		4.68	□□□□□ -1.66
SDH3	YKL141W	ATF1	P40353	525 aa		4.68	□□□□□ -1.66
SDH3	YKL141W	EEB1	Q02891	456 aa		4.68	□□□□□ -1.66
SDH3	YKL141W	RMD1	Q03441	430 aa		4.68	□□□□□ -1.66
SDH3	YKL141W	WHI4	Q07655	649 aa	Known RBP	4.68	□□□□□ -1.66
SDH3	YKL141W	MCH5	Q08777	521 aa		4.68	□□□□□ -1.66
SDH3	YKL141W	ERG4	P25340	473 aa		4.67	□□□□□ -1.66
SDH3	YKL141W	OMS1	Q06668	471 aa		4.67	□□□□□ -1.66
SDH3	YKL141W	SPT6	P23615	1451 aa	Known RBP	4.67	□□□□□ -1.66
SDH3	YKL141W	CAD1	P24813	409 aa	Known RBP	4.66	□□□□□ -1.66
SDH3	YKL141W	STB4	P50104	949 aa		4.66	□□□□□ -1.66
SDH3	YKL141W	RRP15	Q06511	250 aa	Predicted RBP	4.66	□□□□□ -1.66
SDH3	YKL141W	HSL1	P34244	1518 aa		4.66	□□□□□ -1.66
SDH3	YKL141W	CDC34	P14682	295 aa		4.65	□□□□□ -1.67
SDH3	YKL141W	SNF7	P39929	240 aa	Known RBP	4.65	□□□□□ -1.67
SDH3	YKL141W	BDF2	Q07442	638 aa		4.65	□□□□□ -1.67
SDH3	YKL141W	IRC10	Q08118	586 aa		4.65	□□□□□ -1.67
SDH3	YKL141W	ACF2	Q12168	779 aa		4.65	□□□□□ -1.67
SDH3	YKL141W	TRP4	P07285	380 aa	Predicted RBP	4.64	□□□□□ -1.67
SDH3	YKL141W	SAH1	P39954	449 aa	Known RBP	4.64	□□□□□ -1.67
SDH3	YKL141W	UPC2	Q12151	913 aa		4.64	□□□□□ -1.67
SDH3	YKL141W	MON2	P48563	1636 aa	Predicted RBP	4.64	□□□□□ -1.67
SDH3	YKL141W	RPC82	P32349	654 aa		4.63	□□□□□ -1.67
SDH3	YKL141W	MET10	P39692	1035 aa		4.63	□□□□□ -1.67
SDH3	YKL141W	NPP2	P39997	493 aa		4.63	□□□□□ -1.67
SDH3	YKL141W	TIM44	Q01852	431 aa		4.63	□□□□□ -1.67
SDH3	YKL141W	SPO20	Q04359	397 aa		4.63	□□□□□ -1.67
SDH3	YKL141W	RNT1	Q02555	471 aa		4.62	□□□□□ -1.67
SDH3	YKL141W	YMR206W	Q03695	313 aa		4.62	□□□□□ -1.67
SDH3	YKL141W	YLR225C	Q05948	407 aa	Known RBP	4.62	□□□□□ -1.67
SDH3	YKL141W	PET112	P33893	541 aa		4.61	□□□□□ -1.67
SDH3	YKL141W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
SDH3	YKL141W	CUE2	P36075	443 aa	Known RBP	4.61	□□□□□ -1.67
SDH3	YKL141W	SFB2	P53953	876 aa		4.61	□□□□□ -1.67
SDH3	YKL141W	LGE1	Q02796	332 aa	Known RBP	4.61	□□□□□ -1.67
SDH3	YKL141W	SED4	P25365	1065 aa		4.6	□□□□□ -1.67
SDH3	YKL141W	STE14	P32584	239 aa		4.6	□□□□□ -1.67
SDH3	YKL141W	SNM1	P40993	198 aa		4.6	□□□□□ -1.67
SDH3	YKL141W	SRP1	Q02821	542 aa	Known RBP	4.6	□□□□□ -1.67
SDH3	YKL141W	PPR1	P07272	904 aa	Predicted RBP	4.59	□□□□□ -1.67
SDH3	YKL141W	ALG7	P07286	448 aa		4.59	□□□□□ -1.67
SDH3	YKL141W	CDC12	P32468	407 aa	Known RBP	4.59	□□□□□ -1.67
SDH3	YKL141W	MUK1	Q02866	612 aa		4.59	□□□□□ -1.67
SDH3	YKL141W	SWR1	Q05471	1514 aa		4.59	□□□□□ -1.67
SDH3	YKL141W	HIR3	P47171	1648 aa		4.58	□□□□□ -1.68
SDH3	YKL141W	XRN1	P22147	1528 aa	Known RBP	4.58	□□□□□ -1.68
SDH3	YKL141W	MTH1	P35198	433 aa		4.58	□□□□□ -1.68
SDH3	YKL141W	TRM13	Q12383	476 aa		4.58	□□□□□ -1.68
SDH3	YKL141W	MNR2	P35724	969 aa		4.57	□□□□□ -1.68
SDH3	YKL141W	GYP7	P48365	746 aa		4.57	□□□□□ -1.68
SDH3	YKL141W	RAI1	P53063	387 aa	Known RBP	4.57	□□□□□ -1.68
SDH3	YKL141W	GND2	P53319	492 aa		4.57	□□□□□ -1.68
SDH3	YKL141W	ERG5	P54781	538 aa		4.57	□□□□□ -1.68
SDH3	YKL141W	SLU7	Q02775	382 aa	Known RBP	4.57	□□□□□ -1.68
SDH3	YKL141W	SPC42	P36094	363 aa		4.56	□□□□□ -1.68
SDH3	YKL141W	ESC2	Q06340	456 aa		4.56	□□□□□ -1.68
SDH3	YKL141W	YPR196W	Q06595	470 aa		4.56	□□□□□ -1.68
SDH3	YKL141W	YER158C	P40095	573 aa		4.55	□□□□□ -1.68
SDH3	YKL141W	YGR053C	P53234	283 aa		4.55	□□□□□ -1.68
SDH3	YKL141W	HEM3	P28789	327 aa		4.54	□□□□□ -1.68
SDH3	YKL141W	ABD1	P32783	436 aa	Predicted RBP	4.54	□□□□□ -1.68
SDH3	YKL141W	YKR078W	P36158	585 aa	Known RBP	4.54	□□□□□ -1.68
SDH3	YKL141W	OYE2	Q03558	400 aa	Known RBP	4.54	□□□□□ -1.68
SDH3	YKL141W	ASF1	P32447	279 aa		4.53	□□□□□ -1.68
SDH3	YKL141W	KRI1	P42846	591 aa	Known RBP	4.53	□□□□□ -1.68
SDH3	YKL141W	DUS3	Q06053	668 aa	Known RBP	4.53	□□□□□ -1.68
SDH3	YKL141W	NDJ1	Q12366	352 aa		4.53	□□□□□ -1.68
SDH3	YKL141W	NOT3	P06102	836 aa	Known RBP	4.52	□□□□□ -1.69
SDH3	YKL141W	SEC21	P32074	935 aa	Known RBP	4.52	□□□□□ -1.69
SDH3	YKL141W	TSL1	P38427	1098 aa	Known RBP	4.52	□□□□□ -1.69
SDH3	YKL141W	MBP1	P39678	833 aa		4.52	□□□□□ -1.69
SDH3	YKL141W	SDS3	P40505	327 aa		4.52	□□□□□ -1.69
SDH3	YKL141W	PEX19	Q07418	342 aa		4.52	□□□□□ -1.69
SDH3	YKL141W	HBT1	Q07653	1046 aa	Known RBP	4.52	□□□□□ -1.69
SDH3	YKL141W	CDC48	P25694	835 aa	Known RBP	4.51	□□□□□ -1.69
SDH3	YKL141W	FBP1	P09201	348 aa		4.5	□□□□□ -1.69
SDH3	YKL141W	SBA1	P28707	216 aa	Known RBP	4.5	□□□□□ -1.69
SDH3	YKL141W	STE13	P33894	931 aa		4.5	□□□□□ -1.69
SDH3	YKL141W	CTF13	P35203	478 aa		4.5	□□□□□ -1.69
SDH3	YKL141W	YBR238C	P38330	731 aa	Known RBP	4.5	□□□□□ -1.69
SDH3	YKL141W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.5	□□□□□ -1.69	not detected
SDH3	YKL141W	FAA4	P47912	694 aa	Known RBP	4.5	□□□□□ -1.69
SDH3	YKL141W	YKE2	P52553	114 aa		4.5	□□□□□ -1.69
SDH3	YKL141W	SSL1	Q04673	461 aa	Predicted RBP	4.5	□□□□□ -1.69
SDH3	YKL141W	FRE5	Q08908	694 aa		4.5	□□□□□ -1.69
SDH3	YKL141W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.5	□□□□□ -1.69	not detected
SDH3	YKL141W	REV3	P14284	1504 aa		4.5	□□□□□ -1.69
SDH3	YKL141W	MET3	P08536	511 aa		4.49	□□□□□ -1.69
SDH3	YKL141W	AGP1	P25376	633 aa		4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms