RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C YER156CP40093 338 aaKnown RBP7.45□□□□□ -1.22
TDP1YBR223C RPC17P47076 161 aa7.45□□□□□ -1.22
TDP1YBR223C YJR079WP47126 109 aa7.45□□□□□ -1.22
TDP1YBR223C COS5P47187 383 aa7.45□□□□□ -1.22
TDP1YBR223C KAP114P53067 1004 aa7.45□□□□□ -1.22
TDP1YBR223C VID30P53076 958 aa7.45□□□□□ -1.22
TDP1YBR223C STE23Q06010 1027 aa7.45□□□□□ -1.22
TDP1YBR223C YPL277CQ08989 487 aa7.45□□□□□ -1.22
TDP1YBR223C ERG11P10614 530 aa7.45□□□□□ -1.22
TDP1YBR223C GCG1P32656 232 aaKnown RBP7.45□□□□□ -1.22
TDP1YBR223C UBC6P33296 250 aaPredicted RBP7.45□□□□□ -1.22
TDP1YBR223C PGM1P33401 570 aaKnown RBP7.45□□□□□ -1.22
TDP1YBR223C SHC1P39000 512 aa7.45□□□□□ -1.22
TDP1YBR223C SDS3P40505 327 aa7.45□□□□□ -1.22
TDP1YBR223C ULP2P40537 1034 aaPredicted RBP7.45□□□□□ -1.22
TDP1YBR223C HXT8P40886 569 aa7.45□□□□□ -1.22
TDP1YBR223C VPS4P52917 437 aa7.45□□□□□ -1.22
TDP1YBR223C YGR021WP53212 290 aa7.45□□□□□ -1.22
TDP1YBR223C ORC4P54791 529 aa7.45□□□□□ -1.22
TDP1YBR223C UTP14Q04500 899 aaKnown RBP7.45□□□□□ -1.22
TDP1YBR223C FAL1Q12099 399 aaKnown RBP7.45□□□□□ -1.22
TDP1YBR223C ARP6Q12509 438 aa7.45□□□□□ -1.22
TDP1YBR223C PCK1P10963 549 aa7.44□□□□□ -1.22
TDP1YBR223C SUP45P12385 437 aaKnown RBP7.44□□□□□ -1.22
TDP1YBR223C MSM1P22438 575 aa7.44□□□□□ -1.22
TDP1YBR223C YKL023WP36103 277 aaKnown RBP7.44□□□□□ -1.22
TDP1YBR223C LAS1P36146 502 aaPredicted RBP7.44□□□□□ -1.22
TDP1YBR223C UTP7P40055 554 aaKnown RBP7.44□□□□□ -1.22
TDP1YBR223C BRE2P43132 505 aa7.44□□□□□ -1.22
TDP1YBR223C SOL4P53315 255 aa7.44□□□□□ -1.22
TDP1YBR223C DIP5P53388 608 aa7.44□□□□□ -1.22
TDP1YBR223C CNM67P53865 581 aaKnown RBP7.44□□□□□ -1.22
TDP1YBR223C YLR297WQ05899 129 aa7.44□□□□□ -1.22
TDP1YBR223C YOL087CQ99247 1116 aa7.44□□□□□ -1.22
TDP1YBR223C SRD1P09007 221 aa7.43□□□□□ -1.22
TDP1YBR223C CLN3P13365 580 aa7.43□□□□□ -1.22
TDP1YBR223C STV1P37296 890 aa7.43□□□□□ -1.22
TDP1YBR223C RPN3P40016 523 aaKnown RBP7.43□□□□□ -1.22
TDP1YBR223C JJJ1P53863 590 aa7.43□□□□□ -1.22
TDP1YBR223C TRM44Q02648 567 aaKnown RBP7.43□□□□□ -1.22
TDP1YBR223C DIG1Q03063 452 aaKnown RBP7.43□□□□□ -1.22
TDP1YBR223C ECI1Q05871 280 aa7.43□□□□□ -1.22
TDP1YBR223C RIO1Q12196 484 aaKnown RBP7.43□□□□□ -1.22
TDP1YBR223C TRP2P00899 507 aaKnown RBP7.42□□□□□ -1.22
TDP1YBR223C ERG12P07277 443 aa7.42□□□□□ -1.22
TDP1YBR223C KRS1P15180 591 aaKnown RBP7.42□□□□□ -1.22
TDP1YBR223C SEC8P32855 1065 aa7.42□□□□□ -1.22
TDP1YBR223C KEL1P38853 1164 aaKnown RBP7.42□□□□□ -1.22
TDP1YBR223C TIF4631P39935 952 aaKnown RBP7.42□□□□□ -1.22
TDP1YBR223C TRS85P46944 698 aa7.42□□□□□ -1.22
TDP1YBR223C ENV11P53246 860 aa7.42□□□□□ -1.22
TDP1YBR223C YMR018WQ04364 514 aa7.42□□□□□ -1.22
TDP1YBR223C CSR1Q06705 408 aaKnown RBP7.42□□□□□ -1.22
TDP1YBR223C FKS1P38631 1876 aaKnown RBP7.42□□□□□ -1.22
TDP1YBR223C RPS9BP05755 195 aaKnown RBP7.41□□□□□ -1.22
TDP1YBR223C PHO8P11491 566 aa7.41□□□□□ -1.22
TDP1YBR223C CHS2P14180 963 aa7.41□□□□□ -1.22
TDP1YBR223C UGA4P32837 571 aa7.41□□□□□ -1.22
TDP1YBR223C YEL1P34225 687 aa7.41□□□□□ -1.22
TDP1YBR223C UBP13P38187 747 aa7.41□□□□□ -1.22
TDP1YBR223C PSY2P40164 858 aa7.41□□□□□ -1.22
TDP1YBR223C PXA1P41909 870 aa7.41□□□□□ -1.22
TDP1YBR223C SYH1Q02875 849 aaKnown RBP7.41□□□□□ -1.22
TDP1YBR223C SUV3P32580 737 aa7.41□□□□□ -1.22
TDP1YBR223C BLI1P35727 113 aa7.41□□□□□ -1.22
TDP1YBR223C YKL050CP35736 922 aa7.41□□□□□ -1.22
TDP1YBR223C PGM2P37012 569 aaKnown RBP7.41□□□□□ -1.22
TDP1YBR223C RCK2P38623 610 aa7.41□□□□□ -1.22
TDP1YBR223C ECM1P39715 212 aa7.41□□□□□ -1.22
TDP1YBR223C FIG4P42837 879 aa7.41□□□□□ -1.22
TDP1YBR223C LIF1P53150 421 aa7.41□□□□□ -1.22
TDP1YBR223C ESBP6P53918 673 aa7.41□□□□□ -1.22
TDP1YBR223C YML082WQ04533 649 aaKnown RBP7.41□□□□□ -1.22
TDP1YBR223C RKM4Q12504 494 aa7.41□□□□□ -1.22
TDP1YBR223C ESS1P22696 170 aa7.4□□□□□ -1.22
TDP1YBR223C PRP22P24384 1145 aaKnown RBP7.4□□□□□ -1.22
TDP1YBR223C PHO88P38264 188 aaPredicted RBP7.4□□□□□ -1.22
TDP1YBR223C TPS3P38426 1054 aaKnown RBP7.4□□□□□ -1.22
TDP1YBR223C CCT2P39076 527 aaKnown RBP7.4□□□□□ -1.22
TDP1YBR223C NIT1P40447 199 aa7.4□□□□□ -1.22
TDP1YBR223C GPD2P41911 440 aaKnown RBP7.4□□□□□ -1.22
TDP1YBR223C YJR039WP47107 1121 aa7.4□□□□□ -1.22
TDP1YBR223C EEB1Q02891 456 aa7.4□□□□□ -1.22
TDP1YBR223C PHM6Q05637 104 aa7.4□□□□□ -1.22
TDP1YBR223C RLP24Q07915 199 aaKnown RBP7.4□□□□□ -1.22
TDP1YBR223C AIM41Q12032 185 aa7.4□□□□□ -1.22
TDP1YBR223C SPO21Q12411 609 aa7.4□□□□□ -1.22
TDP1YBR223C JIP3O13555 125 aa7.39□□□□□ -1.23
TDP1YBR223C PGK1P00560 416 aaKnown RBP7.39□□□□□ -1.23
TDP1YBR223C ARG4P04076 463 aaPredicted RBP7.39□□□□□ -1.23
TDP1YBR223C PHR1P05066 565 aaKnown RBP RIP-Chip data7.39□□□□□ -1.23not detected
TDP1YBR223C SNF1P06782 633 aaKnown RBP7.39□□□□□ -1.23
TDP1YBR223C HPR1P17629 752 aaKnown RBP7.39□□□□□ -1.23
TDP1YBR223C VHR2P40041 505 aa7.39□□□□□ -1.23
TDP1YBR223C YNL320WP42840 284 aa7.39□□□□□ -1.23
TDP1YBR223C NCS2P53923 493 aaPredicted RBP7.39□□□□□ -1.23
TDP1YBR223C ALD6P54115 500 aaKnown RBP7.39□□□□□ -1.23
TDP1YBR223C TIM8P57744 87 aa7.39□□□□□ -1.23
TDP1YBR223C CUR1Q06469 252 aa7.39□□□□□ -1.23
TDP1YBR223C WHI4Q07655 649 aaKnown RBP7.39□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms