RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 BPHLQ86WA6 291 aaPredicted RBP6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 STAG1Q8WVM7 1258 aa6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 SPOCK3Q9BQ16 436 aa6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 IRF2BPLQ9H1B7 796 aa6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 PRDM10Q9NQV6 1147 aa6.99□□□□□ -1.29
VPS35P1-201ENST00000563400 ALDH1A1P00352 501 aa6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 FKBP4Q02790 459 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 GNL2Q13823 731 aaKnown RBP6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 GPKOWQ92917 476 aaPredicted RBP eCLIP6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 DUSP9Q99956 384 aaKnown RBP6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 MRS2Q9HD23 443 aa6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 METTL5Q9NRN9 209 aaKnown RBP6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 WASF2Q9Y6W5 498 aa6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 FHAD1B1AJZ9 1412 aa6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 ERICH3Q5RHP9 1530 aa6.98□□□□□ -1.29
VPS35P1-201ENST00000563400 CREB3O43889 395 aa6.97□□□□□ -1.29
VPS35P1-201ENST00000563400 ZNF76P36508 570 aa6.97□□□□□ -1.29
VPS35P1-201ENST00000563400 ARID5AQ03989 594 aa6.97□□□□□ -1.29
VPS35P1-201ENST00000563400 MKNK1Q9BUB5 465 aa6.97□□□□□ -1.29
VPS35P1-201ENST00000563400 TERF2IPQ9NYB0 399 aa6.97□□□□□ -1.29
VPS35P1-201ENST00000563400 AQRO60306 1485 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS35P1-201ENST00000563400 RAD54L2Q9Y4B4 1467 aa6.97□□□□□ -1.29
VPS35P1-201ENST00000563400 MAFGO15525 162 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 DKK1O94907 266 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 AVPP01185 164 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 PDE3BQ13370 1112 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 CCDC146Q8IYE0 955 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 VTI1BQ9UEU0 232 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 PRR12Q9ULL5 1215 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 CARMIL1Q5VZK9 1371 aa6.96□□□□□ -1.29
VPS35P1-201ENST00000563400 AXIN1O15169 862 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 SORBS3O60504 671 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 PPFIA4O75335 1185 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 SMPD1P17405 629 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 MCF2L2Q86YR7 1114 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 RNF135Q8IUD6 432 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 CRIPAKQ8N1N5 446 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 DDX56Q9NY93 547 aaKnown RBP6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 WWC3Q9ULE0 1092 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 KIAA1024Q9UPX6 916 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 INPP5FQ9Y2H2 1132 aa6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 LAS1LQ9Y4W2 734 aaKnown RBP6.96□□□□□ -1.3
VPS35P1-201ENST00000563400 SYNJ2O15056 1496 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 ZBBXA8MT70 800 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 J3QL48 77 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 SIAH2O43255 324 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 LDHBP07195 334 aaKnown RBP6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 FMR1Q06787 632 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 ZNF394Q53GI3 561 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 SOGA3Q5TF21 947 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 TMC4Q7Z404 712 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 FMNL3Q8IVF7 1028 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 MPNDQ8N594 471 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 SETDB2Q96T68 719 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 PCDHGB7Q9Y5F8 929 aa6.95□□□□□ -1.3
VPS35P1-201ENST00000563400 TARBP1Q13395 1621 aaKnown RBP6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 TREHO43280 583 aa6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 STK10O94804 968 aaKnown RBP6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 PAX3P23760 479 aa6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 MAPK8P45983 427 aa6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 SMCPP49901 116 aaPredicted RBP6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 RACK1P63244 317 aaKnown RBP6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 DAB2P98082 770 aa6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 PLPP7Q8NBV4 271 aa6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 DNAAF2Q9NVR5 837 aaKnown RBP6.94□□□□□ -1.3
VPS35P1-201ENST00000563400 EIF3JO75822 258 aaKnown RBP6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 SF3B2Q13435 895 aaKnown RBP6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 TSGA10IPQ3SY00 556 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 RBCK1Q9BYM8 510 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 UBA5Q9GZZ9 404 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 AAASQ9NRG9 546 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 FKBPLQ9UIM3 349 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 EMILIN1Q9Y6C2 1016 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 IGF1RP08069 1367 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 SYNJ1O43426 1573 aa6.93□□□□□ -1.3
VPS35P1-201ENST00000563400 ZBTB7BO15156 539 aaPredicted RBP6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 DNAJC6O75061 913 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 PRPF40AO75400 957 aaKnown RBP6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 S100BP04271 92 aaPredicted RBP6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 TBX4P57082 545 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 PSMD2Q13200 908 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 ARID5BQ14865 1188 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 ZNF787Q6DD87 383 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 PHTF2Q8N3S3 785 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 GAS2L2Q8NHY3 880 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 FOXJ1Q92949 421 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 MRFAP1L1Q96HT8 127 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 PURBQ96QR8 312 aaKnown RBP6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 PLCD4Q9BRC7 762 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 CEP126Q9P2H0 1117 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 CARMIL2Q6F5E8 1435 aa6.92□□□□□ -1.3
VPS35P1-201ENST00000563400 MAGEB6P1A0A0J9YX57 407 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 XRCC5P13010 732 aaKnown RBP6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 RHBDL3P58872 404 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 SETQ01105 290 aaPredicted RBP6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 AMPD3Q01432 767 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 PDXDC2PQ6P474 469 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 NME8Q8N427 588 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 SPC25Q9HBM1 224 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 DDX41Q9UJV9 622 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms