RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 NBPF26B4DH59 902 aa16.09■□□□□ 0.17
VPS33A-207ENST00000542790 EIF2S2P20042 333 aaKnown RBP16.09■□□□□ 0.17
VPS33A-207ENST00000542790 USPL1Q5W0Q7 1092 aa16.09■□□□□ 0.17
VPS33A-207ENST00000542790 NBPF10Q6P3W6 841 aaKnown RBP16.09■□□□□ 0.17
VPS33A-207ENST00000542790 NBPF15Q8N660 670 aa16.09■□□□□ 0.17
VPS33A-207ENST00000542790 ERBB4Q15303 1308 aa16.09■□□□□ 0.17
VPS33A-207ENST00000542790 MMP10P09238 476 aa16.08■□□□□ 0.16
VPS33A-207ENST00000542790 PIP4K2AP48426 406 aaPredicted RBP16.08■□□□□ 0.16
VPS33A-207ENST00000542790 KRT24Q2M2I5 525 aa16.08■□□□□ 0.16
VPS33A-207ENST00000542790 TBC1D2BQ9UPU7 963 aa16.08■□□□□ 0.16
VPS33A-207ENST00000542790 UBR3Q6ZT12 1888 aa16.08■□□□□ 0.16
VPS33A-207ENST00000542790 DUSP27Q5VZP5 1158 aa16.07■□□□□ 0.16
VPS33A-207ENST00000542790 DZIP3Q86Y13 1208 aaKnown RBP16.07■□□□□ 0.16
VPS33A-207ENST00000542790 CHMP4AQ9BY43 222 aa16.07■□□□□ 0.16
VPS33A-207ENST00000542790 KDM3BQ7LBC6 1761 aa16.07■□□□□ 0.16
VPS33A-207ENST00000542790 HDGFL1Q5TGJ6 251 aa16.06■□□□□ 0.16
VPS33A-207ENST00000542790 TSR2Q969E8 191 aaKnown RBP16.06■□□□□ 0.16
VPS33A-207ENST00000542790 FHDC1Q9C0D6 1143 aaPredicted RBP16.06■□□□□ 0.16
VPS33A-207ENST00000542790 TUBGCP6Q96RT7 1819 aa16.05■□□□□ 0.16
VPS33A-207ENST00000542790 MYL6BP14649 208 aa16.05■□□□□ 0.16
VPS33A-207ENST00000542790 BCL2L12Q9HB09 334 aa16.05■□□□□ 0.16
VPS33A-207ENST00000542790 PARP3Q9Y6F1 533 aa16.05■□□□□ 0.16
VPS33A-207ENST00000542790 MYH14Q7Z406 1995 aaKnown RBP16.04■□□□□ 0.16
VPS33A-207ENST00000542790 ELL2O00472 640 aaPredicted RBP16.04■□□□□ 0.16
VPS33A-207ENST00000542790 RGL2O15211 777 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 CAMTA2O94983 1202 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 TM4SF1P30408 202 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 GOLGA2Q08379 1002 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 C8orf58Q8NAV2 365 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 NECTIN2Q92692 538 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 SYT17Q9BSW7 474 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 MYH16Q9H6N6 1097 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 ZNF652Q9Y2D9 606 aa16.04■□□□□ 0.16
VPS33A-207ENST00000542790 ZNF521Q96K83 1311 aa16.03■□□□□ 0.16
VPS33A-207ENST00000542790 PDIA6Q15084 440 aa16.03■□□□□ 0.16
VPS33A-207ENST00000542790 CLEC4GQ6UXB4 293 aa16.03■□□□□ 0.16
VPS33A-207ENST00000542790 KLHL34Q8N239 644 aa16.03■□□□□ 0.16
VPS33A-207ENST00000542790 DDX21Q9NR30 783 aaKnown RBP eCLIP16.03■□□□□ 0.16
VPS33A-207ENST00000542790 DBF4Q9UBU7 674 aaPredicted RBP16.03■□□□□ 0.16
VPS33A-207ENST00000542790 CD2APQ9Y5K6 639 aa16.03■□□□□ 0.16
VPS33A-207ENST00000542790 FANCIQ9NVI1 1328 aa16.02■□□□□ 0.16
VPS33A-207ENST00000542790 NFIXQ14938 502 aa16.02■□□□□ 0.16
VPS33A-207ENST00000542790 KIF6Q6ZMV9 814 aa16.02■□□□□ 0.16
VPS33A-207ENST00000542790 ERVV-1B6SEH8 477 aa16.01■□□□□ 0.15
VPS33A-207ENST00000542790 DDR1Q08345 913 aa16.01■□□□□ 0.15
VPS33A-207ENST00000542790 PROSER3Q2NL68 480 aa16.01■□□□□ 0.15
VPS33A-207ENST00000542790 CHPF2Q9P2E5 772 aa16.01■□□□□ 0.15
VPS33A-207ENST00000542790 POLRMTO00411 1230 aaKnown RBP16■□□□□ 0.15
VPS33A-207ENST00000542790 TWISTNBQ3B726 338 aaPredicted RBP16■□□□□ 0.15
VPS33A-207ENST00000542790 CCDC30Q5VVM6 783 aa16■□□□□ 0.15
VPS33A-207ENST00000542790 TBC1D9BQ66K14 1250 aa16■□□□□ 0.15
VPS33A-207ENST00000542790 BICDL1Q6ZP65 573 aa16■□□□□ 0.15
VPS33A-207ENST00000542790 LRP10Q7Z4F1 713 aa16■□□□□ 0.15
VPS33A-207ENST00000542790 TSPYL6Q8N831 410 aa16■□□□□ 0.15
VPS33A-207ENST00000542790 SETDB2Q96T68 719 aa16■□□□□ 0.15
VPS33A-207ENST00000542790 HYPKQ9NX55 129 aa16■□□□□ 0.15
VPS33A-207ENST00000542790 MAP3K15Q6ZN16 1313 aa15.99■□□□□ 0.15
VPS33A-207ENST00000542790 SRCAPQ6ZRS2 3230 aa15.99■□□□□ 0.15
VPS33A-207ENST00000542790 GABBR2O75899 941 aa15.99■□□□□ 0.15
VPS33A-207ENST00000542790 ANXA1P04083 346 aa15.99■□□□□ 0.15
VPS33A-207ENST00000542790 TTLL7Q6ZT98 887 aa15.99■□□□□ 0.15
VPS33A-207ENST00000542790 COPS6Q7L5N1 327 aa15.99■□□□□ 0.15
VPS33A-207ENST00000542790 RASEFQ8IZ41 740 aa15.99■□□□□ 0.15
VPS33A-207ENST00000542790 E9PSI1 815 aa15.98■□□□□ 0.15
VPS33A-207ENST00000542790 SERPINB2P05120 415 aa15.98■□□□□ 0.15
VPS33A-207ENST00000542790 COL24A1Q17RW2 1714 aa15.98■□□□□ 0.15
VPS33A-207ENST00000542790 ZNF579Q8NAF0 562 aaKnown RBP15.98■□□□□ 0.15
VPS33A-207ENST00000542790 XAGE3Q8WTP9 111 aa15.98■□□□□ 0.15
VPS33A-207ENST00000542790 EXOSC9Q06265 439 aaKnown RBP15.97■□□□□ 0.15
VPS33A-207ENST00000542790 AIMP1Q12904 312 aaKnown RBP15.97■□□□□ 0.15
VPS33A-207ENST00000542790 HLFQ16534 295 aa15.97■□□□□ 0.15
VPS33A-207ENST00000542790 ZBTB3Q9H5J0 574 aa15.97■□□□□ 0.15
VPS33A-207ENST00000542790 CARMIL3Q8ND23 1372 aa15.97■□□□□ 0.15
VPS33A-207ENST00000542790 C4AP0C0L4 1744 aa15.97■□□□□ 0.15
VPS33A-207ENST00000542790 NUBP1P53384 320 aa15.96■□□□□ 0.15
VPS33A-207ENST00000542790 TGFB2P61812 414 aa15.96■□□□□ 0.15
VPS33A-207ENST00000542790 NLGN2Q8NFZ4 835 aa15.96■□□□□ 0.15
VPS33A-207ENST00000542790 STK31Q9BXU1 1019 aa15.96■□□□□ 0.15
VPS33A-207ENST00000542790 NIP7Q9Y221 180 aaKnown RBP eCLIP15.96■□□□□ 0.15
VPS33A-207ENST00000542790 LAMB4A4D0S4 1761 aa15.95■□□□□ 0.14
VPS33A-207ENST00000542790 VAMP4O75379 141 aa15.95■□□□□ 0.14
VPS33A-207ENST00000542790 SLFN5Q08AF3 891 aa15.95■□□□□ 0.14
VPS33A-207ENST00000542790 GIGYF2Q6Y7W6 1299 aaKnown RBP15.95■□□□□ 0.14
VPS33A-207ENST00000542790 TSPYL2Q9H2G4 693 aaPredicted RBP15.95■□□□□ 0.14
VPS33A-207ENST00000542790 ZBTB47Q9UFB7 747 aaPredicted RBP15.95■□□□□ 0.14
VPS33A-207ENST00000542790 NPHP1O15259 732 aa15.94■□□□□ 0.14
VPS33A-207ENST00000542790 HSP90AB3PQ58FF7 597 aa15.94■□□□□ 0.14
VPS33A-207ENST00000542790 ANKRD13DQ6ZTN6 518 aa15.94■□□□□ 0.14
VPS33A-207ENST00000542790 HNRNPUQ00839 825 aaKnown RBP eCLIP15.93■□□□□ 0.14
VPS33A-207ENST00000542790 TPTE2Q6XPS3 522 aa15.93■□□□□ 0.14
VPS33A-207ENST00000542790 NBPF5PQ86XG9 351 aaPredicted RBP15.93■□□□□ 0.14
VPS33A-207ENST00000542790 CNBD1Q8NA66 436 aa15.93■□□□□ 0.14
VPS33A-207ENST00000542790 PLBD2Q8NHP8 589 aa15.93■□□□□ 0.14
VPS33A-207ENST00000542790 PHF12Q96QT6 1004 aa15.93■□□□□ 0.14
VPS33A-207ENST00000542790 C10orf71Q711Q0 1435 aa15.93■□□□□ 0.14
VPS33A-207ENST00000542790 DDX58O95786 925 aaKnown RBP15.92■□□□□ 0.14
VPS33A-207ENST00000542790 PRR5LQ6MZQ0 368 aa15.92■□□□□ 0.14
VPS33A-207ENST00000542790 ZNF34Q8IZ26 560 aa15.92■□□□□ 0.14
VPS33A-207ENST00000542790 CDCA7LQ96GN5 454 aa15.92■□□□□ 0.14
VPS33A-207ENST00000542790 PHAXQ9H814 394 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms