RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 NSFL1CQ9UNZ2 370 aaKnown RBP6.92□□□□□ -1.3
USP54-217ENST00000498213 LZTS3O60299 673 aaPredicted RBP6.91□□□□□ -1.3
USP54-217ENST00000498213 GDF10P55107 478 aa6.91□□□□□ -1.3
USP54-217ENST00000498213 XAGE2Q96GT9 111 aa6.91□□□□□ -1.3
USP54-217ENST00000498213 SPOCK3Q9BQ16 436 aa6.91□□□□□ -1.3
USP54-217ENST00000498213 ETNK1Q9HBU6 452 aa6.91□□□□□ -1.3
USP54-217ENST00000498213 PREX1Q8TCU6 1659 aa6.9□□□□□ -1.3
USP54-217ENST00000498213 USP17L5A8MUK1 530 aa6.9□□□□□ -1.3
USP54-217ENST00000498213 SPATA31C2B4DYI2 1134 aa6.9□□□□□ -1.3
USP54-217ENST00000498213 NCOA4Q13772 614 aa6.9□□□□□ -1.3
USP54-217ENST00000498213 WDR44Q5JSH3 913 aa6.9□□□□□ -1.3
USP54-217ENST00000498213 XP32Q5T750 250 aa6.9□□□□□ -1.3
USP54-217ENST00000498213 NUCKS1Q9H1E3 243 aaKnown RBP6.9□□□□□ -1.3
USP54-217ENST00000498213 FANCAO15360 1455 aa6.9□□□□□ -1.31
USP54-217ENST00000498213 ADAM23O75077 832 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 STAU1O95793 577 aaKnown RBP6.89□□□□□ -1.31
USP54-217ENST00000498213 F11P03951 625 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 INHAP05111 366 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 PHKA2P46019 1235 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 GTF2IP78347 998 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 TRIM50Q86XT4 487 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 DEPDC4Q8N2C3 294 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 LRRC4BQ9NT99 713 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 PHLDB1Q86UU1 1377 aa6.89□□□□□ -1.31
USP54-217ENST00000498213 AKNAQ7Z591 1439 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 OIP5O43482 229 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 ITGB2P05107 769 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 CSB-PGBD3P0DP91 1061 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 PGBD3Q8N328 593 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 GALNT6Q8NCL4 622 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 RHBDD1Q8TEB9 315 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 GLMNQ92990 594 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 GPAMQ9HCL2 828 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 SERTAD1Q9UHV2 236 aa6.88□□□□□ -1.31
USP54-217ENST00000498213 FRMPD1Q5SYB0 1578 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 TTC37Q6PGP7 1564 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 DISP1Q96F81 1524 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 NCOA1Q15788 1441 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 A0A1B0GTH6 734 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 USP17L3A6NCW0 530 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 USP17L4A6NCW7 530 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 BACH1O14867 736 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 ATP9BO43861 1147 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 MAP2K3P46734 347 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 SCNN1DP51172 638 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 USP17L2Q6R6M4 530 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 USP17L1Q7RTZ2 530 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 ADAMTS19Q8TE59 1207 aa6.87□□□□□ -1.31
USP54-217ENST00000498213 CALR3Q96L12 384 aaKnown RBP6.87□□□□□ -1.31
USP54-217ENST00000498213 OXCT2Q9BYC2 517 aaPredicted RBP6.87□□□□□ -1.31
USP54-217ENST00000498213 FHDC1Q9C0D6 1143 aaPredicted RBP6.87□□□□□ -1.31
USP54-217ENST00000498213 RBM19Q9Y4C8 960 aaKnown RBP6.87□□□□□ -1.31
USP54-217ENST00000498213 ARHGEF40Q8TER5 1519 aa6.86□□□□□ -1.31
USP54-217ENST00000498213 A6NJR5 290 aa6.86□□□□□ -1.31
USP54-217ENST00000498213 PROCP04070 461 aa6.86□□□□□ -1.31
USP54-217ENST00000498213 PLA2G4AP47712 749 aa6.86□□□□□ -1.31
USP54-217ENST00000498213 ATP1A2P50993 1020 aa6.86□□□□□ -1.31
USP54-217ENST00000498213 C4orf17Q53FE4 359 aa6.86□□□□□ -1.31
USP54-217ENST00000498213 HRH3Q9Y5N1 445 aa6.86□□□□□ -1.31
USP54-217ENST00000498213 SETD1AO15047 1707 aaKnown RBP6.85□□□□□ -1.31
USP54-217ENST00000498213 SIGLEC1Q9BZZ2 1709 aa6.85□□□□□ -1.31
USP54-217ENST00000498213 SMTNP53814 917 aa6.85□□□□□ -1.31
USP54-217ENST00000498213 TBC1D9Q6ZT07 1266 aa6.85□□□□□ -1.31
USP54-217ENST00000498213 PPARGC1BQ86YN6 1023 aaKnown RBP6.85□□□□□ -1.31
USP54-217ENST00000498213 CFHR5Q9BXR6 569 aa6.85□□□□□ -1.31
USP54-217ENST00000498213 NIFKQ9BYG3 293 aaKnown RBP6.85□□□□□ -1.31
USP54-217ENST00000498213 FER1L4A9Z1Z3 1794 aa6.85□□□□□ -1.31
USP54-217ENST00000498213 SNRPNP63162 240 aaKnown RBP6.84□□□□□ -1.31
USP54-217ENST00000498213 EFHC2Q5JST6 749 aa6.84□□□□□ -1.31
USP54-217ENST00000498213 PLEKHM2Q8IWE5 1019 aa6.84□□□□□ -1.31
USP54-217ENST00000498213 FNBP4Q8N3X1 1017 aaPredicted RBP6.84□□□□□ -1.31
USP54-217ENST00000498213 AIDAQ96BJ3 306 aa6.84□□□□□ -1.31
USP54-217ENST00000498213 UCN2Q96RP3 112 aa6.84□□□□□ -1.31
USP54-217ENST00000498213 PHF24Q9UPV7 400 aa6.84□□□□□ -1.31
USP54-217ENST00000498213 PCDHGA11Q9Y5H2 935 aa6.84□□□□□ -1.31
USP54-217ENST00000498213 DENND4BO75064 1496 aaPredicted RBP6.84□□□□□ -1.31
USP54-217ENST00000498213 NEO1Q92859 1461 aa6.84□□□□□ -1.31
USP54-217ENST00000498213 TMEM229AB2RXF0 380 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 SHISA8B8ZZ34 492 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 THBS1P07996 1170 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 NBPF1Q3BBV0 1214 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 TPCN2Q8NHX9 752 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 KLRG1Q96E93 195 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 CABP1Q9NZU7 370 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 MKRN1Q9UHC7 482 aaKnown RBP6.83□□□□□ -1.32
USP54-217ENST00000498213 MKL2Q9ULH7 1088 aa6.83□□□□□ -1.32
USP54-217ENST00000498213 A6NJY4 79 aa6.82□□□□□ -1.32
USP54-217ENST00000498213 TATP17735 454 aaPredicted RBP6.82□□□□□ -1.32
USP54-217ENST00000498213 MSX1P28360 303 aa6.82□□□□□ -1.32
USP54-217ENST00000498213 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.82□□□□□ -1.32
USP54-217ENST00000498213 RUBCNLQ9H714 662 aa6.82□□□□□ -1.32
USP54-217ENST00000498213 RRAGCQ9HB90 399 aa6.82□□□□□ -1.32
USP54-217ENST00000498213 DNAAF2Q9NVR5 837 aaKnown RBP6.82□□□□□ -1.32
USP54-217ENST00000498213 ZNF358Q9NW07 568 aa6.82□□□□□ -1.32
USP54-217ENST00000498213 TFIP11Q9UBB9 837 aaKnown RBP6.82□□□□□ -1.32
USP54-217ENST00000498213 ZFYVE16Q7Z3T8 1539 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 ARHGEF12Q9NZN5 1544 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 CAMSAP1Q5T5Y3 1602 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 KRBA1A5PL33 1030 aa6.81□□□□□ -1.32
USP54-217ENST00000498213 K7ELQ4 463 aaPredicted RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms